Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.26□□□□□ -1.89
HTTP42858 CYP2C60P-201ENST00000566088 139 ntBASIC3.26□□□□□ -1.89
HTTP42858 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.26□□□□□ -1.89
HTTP42858 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.26□□□□□ -1.89
HTTP42858 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.26□□□□□ -1.89
HTTP42858 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.26□□□□□ -1.89
HTTP42858 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HTTP42858 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
HTTP42858 AC087190.4-201ENST00000574616 8334 ntBASIC3.26□□□□□ -1.89
HTTP42858 NPM1P37-201ENST00000403105 874 ntBASIC3.26□□□□□ -1.89
HTTP42858 AC006989.1-201ENST00000427212 131 ntBASIC3.26□□□□□ -1.89
HTTP42858 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
HTTP42858 AC108210.2-201ENST00000503681 201 ntBASIC3.26□□□□□ -1.89
HTTP42858 KLHL2P1-201ENST00000508691 521 ntBASIC3.26□□□□□ -1.89
HTTP42858 AC078899.3-201ENST00000599065 212 ntBASIC3.26□□□□□ -1.89
HTTP42858 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HTTP42858 U3.42-201ENST00000408746 214 ntBASIC3.25□□□□□ -1.89
HTTP42858 NPM1P24-201ENST00000428039 894 ntBASIC3.25□□□□□ -1.89
HTTP42858 AC087499.2-201ENST00000432861 149 ntBASIC3.25□□□□□ -1.89
HTTP42858 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC3.25□□□□□ -1.89
HTTP42858 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.25□□□□□ -1.89
HTTP42858 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.25□□□□□ -1.89
HTTP42858 AC009977.1-201ENST00000586015 570 ntBASIC3.25□□□□□ -1.89
HTTP42858 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.25□□□□□ -1.89
HTTP42858 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.25□□□□□ -1.89
HTTP42858 MTND5P24-201ENST00000438892 1767 ntBASIC3.25□□□□□ -1.89
HTTP42858 AC004972.1-201ENST00000623934 2209 ntBASIC3.25□□□□□ -1.89
HTTP42858 NCAPGP1-201ENST00000505112 1814 ntBASIC3.25□□□□□ -1.89
HTTP42858 OR1S2-201ENST00000302592 978 ntBASIC3.25□□□□□ -1.89
HTTP42858 U8.2-201ENST00000363156 134 ntBASIC3.25□□□□□ -1.89
HTTP42858 SNORD74.4-201ENST00000364129 80 ntBASIC3.25□□□□□ -1.89
HTTP42858 RN7SKP223-201ENST00000410582 62 ntBASIC3.25□□□□□ -1.89
HTTP42858 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.25□□□□□ -1.89
HTTP42858 AC025181.1-201ENST00000477507 416 ntBASIC3.25□□□□□ -1.89
HTTP42858 AC111000.2-201ENST00000507775 550 ntBASIC3.25□□□□□ -1.89
HTTP42858 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.25□□□□□ -1.89
HTTP42858 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HTTP42858 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.25□□□□□ -1.89
HTTP42858 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.25□□□□□ -1.89
HTTP42858 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.25□□□□□ -1.89
HTTP42858 AC017071.1-201ENST00000564407 2204 ntBASIC3.25□□□□□ -1.89
HTTP42858 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
HTTP42858 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 RNA5SP68-201ENST00000363885 119 ntBASIC3.24□□□□□ -1.89
HTTP42858 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HTTP42858 RN7SL93P-201ENST00000463035 293 ntBASIC3.24□□□□□ -1.89
HTTP42858 RPL21P6-201ENST00000479171 504 ntBASIC3.24□□□□□ -1.89
HTTP42858 AC026782.2-201ENST00000510845 636 ntBASIC3.24□□□□□ -1.89
HTTP42858 uc_338.32-201ENST00000615087 172 ntBASIC3.24□□□□□ -1.89
HTTP42858 DCAF13P3-201ENST00000561147 1334 ntBASIC3.24□□□□□ -1.89
HTTP42858 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HTTP42858 THAP12P8-201ENST00000447914 2115 ntBASIC3.24□□□□□ -1.89
HTTP42858 HSPA8P4-201ENST00000511877 1920 ntBASIC3.24□□□□□ -1.89
HTTP42858 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 RNA5SP508-201ENST00000411327 119 ntBASIC3.24□□□□□ -1.89
HTTP42858 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 ACTG1P13-201ENST00000486987 1043 ntBASIC3.24□□□□□ -1.89
HTTP42858 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.24□□□□□ -1.89
HTTP42858 MIR5047-201ENST00000579212 100 ntBASIC3.24□□□□□ -1.89
HTTP42858 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.24□□□□□ -1.89
HTTP42858 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HTTP42858 AC011242.1-201ENST00000433596 1158 ntBASIC3.24□□□□□ -1.89
HTTP42858 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.24□□□□□ -1.89
HTTP42858 GAPDHP39-201ENST00000481866 979 ntBASIC3.24□□□□□ -1.89
HTTP42858 AC008565.1-201ENST00000509046 885 ntBASIC3.24□□□□□ -1.89
HTTP42858 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC3.24□□□□□ -1.89
HTTP42858 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.24□□□□□ -1.89
HTTP42858 BNIP3P38-201ENST00000601117 544 ntBASIC3.24□□□□□ -1.89
HTTP42858 AC138965.3-201ENST00000623875 498 ntBASIC3.24□□□□□ -1.89
HTTP42858 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HTTP42858 AC000403.1-201ENST00000613696 3585 ntBASIC3.23□□□□□ -1.89
HTTP42858 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC3.23□□□□□ -1.89
HTTP42858 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.23□□□□□ -1.89
HTTP42858 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 ARL4AP1-201ENST00000503220 705 ntBASIC3.23□□□□□ -1.89
HTTP42858 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.23□□□□□ -1.89
HTTP42858 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.23□□□□□ -1.89
HTTP42858 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.23□□□□□ -1.89
HTTP42858 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.23□□□□□ -1.89
HTTP42858 RAD21-204ENST00000518055 896 ntTSL 2 BASIC3.23□□□□□ -1.89
HTTP42858 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HTTP42858 DNAJC19P3-201ENST00000594491 331 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms