Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AGGF1P8-201ENST00000562979 1000 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AL133457.1-201ENST00000564251 987 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXD3P31249 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXD3P31249 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 BNIP3P23-201ENST00000599655 511 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 BNIP3P11-201ENST00000603878 563 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC025588.4-201ENST00000615802 908 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AC138965.3-201ENST00000623875 498 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 AC107081.3-201ENST00000612715 2034 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 OR4G11P-202ENST00000642116 1414 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HOXD3P31249 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXD3P31249 AC117529.2-201ENST00000512159 2068 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 AL034370.1-201ENST00000397254 1590 ntBASIC3.93□□□□□ -1.78
HOXD3P31249 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC021242.1-201ENST00000507315 2035 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXD3P31249 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 FHIT-201ENST00000341848 174 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 RN7SKP95-201ENST00000362860 303 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 RNU6-259P-201ENST00000383999 107 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 SNORA66-201ENST00000384792 133 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXD3P31249 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 GSTM3P2-201ENST00000412746 530 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AL358176.3-201ENST00000420757 454 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 RPS27AP14-201ENST00000422868 454 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 AL356583.2-201ENST00000426536 280 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC009238.2-201ENST00000431026 355 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 RHOT1P3-201ENST00000436571 331 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 HMGB3P9-201ENST00000441799 583 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 KNOP1P3-201ENST00000446933 426 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 HMGN3P1-201ENST00000453847 193 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC090142.1-201ENST00000465776 462 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 NIP7P2-201ENST00000485801 544 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 TMEM251P1-201ENST00000503717 318 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 BTF3P13-201ENST00000513224 490 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXD3P31249 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC105233.3-201ENST00000531125 744 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXD3P31249 AP002453.2-201ENST00000533503 320 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 OR6C73P-201ENST00000546432 358 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 SULT1C2P1-202ENST00000562418 459 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXD3P31249 GMFG-202ENST00000594700 397 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 AL133338.2-201ENST00000604292 736 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC126118.1-201ENST00000607744 628 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AL359535.1-201ENST00000612100 1087 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXD3P31249 WT1-AS_8.1-201ENST00000615200 275 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC095031.1-201ENST00000623685 672 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 SEPT14P19-203ENST00000633205 211 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AC093591.3-201ENST00000634516 308 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 AC099654.12-201ENST00000639868 649 ntBASIC3.92□□□□□ -1.78
HOXD3P31249 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC3.92□□□□□ -1.78
HOXD3P31249 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXD3P31249 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HOXD3P31249 AP002907.1-201ENST00000606361 1430 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms