Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.63□□□□□ -1.51
CUX2O14529 Y_RNA.226-201ENST00000364337 114 ntBASIC5.63□□□□□ -1.51
CUX2O14529 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.63□□□□□ -1.51
CUX2O14529 MTND4P22-201ENST00000413116 1169 ntBASIC5.63□□□□□ -1.51
CUX2O14529 AC019097.1-201ENST00000424783 735 ntBASIC5.63□□□□□ -1.51
CUX2O14529 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.63□□□□□ -1.51
CUX2O14529 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.63□□□□□ -1.51
CUX2O14529 ANP32BP2-201ENST00000454525 545 ntBASIC5.63□□□□□ -1.51
CUX2O14529 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC5.63□□□□□ -1.51
CUX2O14529 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.63□□□□□ -1.51
CUX2O14529 AC019227.1-201ENST00000526902 510 ntBASIC5.63□□□□□ -1.51
CUX2O14529 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CUX2O14529 AC019072.1-201ENST00000604535 1551 ntBASIC5.62□□□□□ -1.51
CUX2O14529 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.62□□□□□ -1.51
CUX2O14529 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.62□□□□□ -1.51
CUX2O14529 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.62□□□□□ -1.51
CUX2O14529 AC004552.1-201ENST00000419089 348 ntBASIC5.62□□□□□ -1.51
CUX2O14529 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC5.62□□□□□ -1.51
CUX2O14529 RPS26P3-201ENST00000470205 348 ntBASIC5.62□□□□□ -1.51
CUX2O14529 AC090543.2-201ENST00000483963 348 ntBASIC5.62□□□□□ -1.51
CUX2O14529 AC004057.1-201ENST00000485827 348 ntBASIC5.62□□□□□ -1.51
CUX2O14529 AL139174.1-201ENST00000531489 886 ntBASIC5.62□□□□□ -1.51
CUX2O14529 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CUX2O14529 AL359715.5-201ENST00000623431 443 ntBASIC5.62□□□□□ -1.51
CUX2O14529 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.61□□□□□ -1.51
CUX2O14529 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CUX2O14529 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.61□□□□□ -1.51
CUX2O14529 RPS24P13-201ENST00000442520 397 ntBASIC5.61□□□□□ -1.51
CUX2O14529 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.61□□□□□ -1.51
CUX2O14529 NPM1P17-201ENST00000479221 602 ntBASIC5.61□□□□□ -1.51
CUX2O14529 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.61□□□□□ -1.51
CUX2O14529 RNA5SP24-201ENST00000516478 95 ntBASIC5.61□□□□□ -1.51
CUX2O14529 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.61□□□□□ -1.51
CUX2O14529 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.61□□□□□ -1.51
CUX2O14529 BRDTP1-201ENST00000605735 677 ntBASIC5.61□□□□□ -1.51
CUX2O14529 AC103858.2-201ENST00000621471 543 ntBASIC5.61□□□□□ -1.51
CUX2O14529 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CUX2O14529 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
CUX2O14529 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CUX2O14529 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CUX2O14529 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CUX2O14529 RPL7P12-201ENST00000446719 750 ntBASIC5.6□□□□□ -1.51
CUX2O14529 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX2O14529 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.6□□□□□ -1.51
CUX2O14529 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.6□□□□□ -1.51
CUX2O14529 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.6□□□□□ -1.51
CUX2O14529 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX2O14529 BNIP3P8-201ENST00000597863 560 ntBASIC5.6□□□□□ -1.51
CUX2O14529 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CUX2O14529 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX2O14529 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.6□□□□□ -1.51
CUX2O14529 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
CUX2O14529 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CUX2O14529 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX2O14529 RPL21P40-201ENST00000428586 483 ntBASIC5.59□□□□□ -1.51
CUX2O14529 MTND2P25-201ENST00000449028 610 ntBASIC5.59□□□□□ -1.51
CUX2O14529 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX2O14529 RN7SL93P-201ENST00000463035 293 ntBASIC5.59□□□□□ -1.51
CUX2O14529 HSPE1P6-201ENST00000479457 291 ntBASIC5.59□□□□□ -1.51
CUX2O14529 AC104687.1-201ENST00000485829 412 ntBASIC5.59□□□□□ -1.51
CUX2O14529 COX6CP8-201ENST00000522620 226 ntBASIC5.59□□□□□ -1.51
CUX2O14529 AC006518.1-201ENST00000541449 943 ntBASIC5.59□□□□□ -1.51
CUX2O14529 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.59□□□□□ -1.51
CUX2O14529 HMGB1P50-201ENST00000605814 607 ntBASIC5.59□□□□□ -1.51
CUX2O14529 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.59□□□□□ -1.51
CUX2O14529 AC100793.4-201ENST00000613683 429 ntBASIC5.59□□□□□ -1.51
CUX2O14529 AC241377.1-201ENST00000619797 406 ntBASIC5.59□□□□□ -1.51
CUX2O14529 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
CUX2O14529 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUX2O14529 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.58□□□□□ -1.52
CUX2O14529 RNU1-70P-201ENST00000362618 164 ntBASIC5.58□□□□□ -1.52
CUX2O14529 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 RNU1-89P-201ENST00000384592 164 ntBASIC5.58□□□□□ -1.52
CUX2O14529 LAP3P1-201ENST00000403648 294 ntBASIC5.58□□□□□ -1.52
CUX2O14529 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.58□□□□□ -1.52
CUX2O14529 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 RNU4-18P-201ENST00000516751 149 ntBASIC5.58□□□□□ -1.52
CUX2O14529 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX2O14529 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.58□□□□□ -1.52
CUX2O14529 AC243829.7-201ENST00000633081 225 ntBASIC5.58□□□□□ -1.52
CUX2O14529 AC000403.1-201ENST00000613696 3585 ntBASIC5.58□□□□□ -1.52
CUX2O14529 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 AC046144.1-201ENST00000478559 1853 ntBASIC5.58□□□□□ -1.52
CUX2O14529 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
CUX2O14529 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 AL031736.2-201ENST00000426573 787 ntBASIC5.58□□□□□ -1.52
CUX2O14529 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUX2O14529 AC063976.3-201ENST00000426849 329 ntBASIC5.58□□□□□ -1.52
CUX2O14529 AC008549.1-201ENST00000512900 643 ntBASIC5.58□□□□□ -1.52
CUX2O14529 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms