Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC246680.2-201ENST00000422106 389 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AC005019.1-201ENST00000436455 431 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AC009263.1-201ENST00000441193 1239 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 YWHAQP9-201ENST00000445891 512 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 HMGN1P5-201ENST00000448591 263 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 RN7SL585P-201ENST00000470538 280 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 RPL31P61-201ENST00000496160 376 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 RANP9-201ENST00000519957 271 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AC124293.1-201ENST00000530034 493 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 CYB5AP5-201ENST00000549779 389 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AC010735.1-201ENST00000567305 1026 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 AP003072.4-201ENST00000624580 310 ntBASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SHROOM4Q9ULL8 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 HSP90AA4P-202ENST00000506915 2228 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AL022322.2-201ENST00000624072 20397 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 RNU4-44P-201ENST00000363050 141 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AL031736.2-201ENST00000426573 787 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 MTND3P3-201ENST00000505004 126 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 PPBPP1-201ENST00000510807 373 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 LEF1-218ENST00000512172 598 ntTSL 2 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AC008802.1-201ENST00000519121 791 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AC126365.2-201ENST00000580630 379 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AC133794.1-201ENST00000602731 914 ntBASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SHROOM4Q9ULL8 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SHROOM4Q9ULL8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
SHROOM4Q9ULL8 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SHROOM4Q9ULL8 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SHROOM4Q9ULL8 AC004944.1-201ENST00000517807 3059 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 ESD-201ENST00000378697 1079 ntTSL 5 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 RNU2-6P-201ENST00000411404 190 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 FABP5P3-201ENST00000437960 408 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 C1GALT1P2-201ENST00000510813 1104 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 AC022790.1-201ENST00000522872 204 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 MIR4789-201ENST00000577469 82 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 BNIP3P27-201ENST00000599991 412 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 AL513477.2-201ENST00000607858 568 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 AC006927.2-201ENST00000639256 389 ntBASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC7.21□□□□□ -1.26
SHROOM4Q9ULL8 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 SNORD65C-201ENST00000390962 71 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 RNU6-932P-201ENST00000391108 106 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 RPL22P22-201ENST00000395439 379 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 SNORA3C-201ENST00000408792 125 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 SDR42E1P3-201ENST00000438345 502 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 HMGB1P37-201ENST00000439613 609 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 CYCSP35-201ENST00000451978 304 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC010872.1-201ENST00000624225 675 ntBASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
SHROOM4Q9ULL8 AC026523.2-201ENST00000625039 7739 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 AC019155.1-201ENST00000382242 574 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 MIR1251-201ENST00000408552 70 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 DCLRE1CP1-201ENST00000454630 470 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 CCNB1IP1P3-201ENST00000454702 829 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 RNU6-513P-201ENST00000516104 104 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 AP003117.1-201ENST00000602771 554 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 MTCO1P6-201ENST00000481192 1384 ntBASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHROOM4Q9ULL8 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms