Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC007066.1-201ENST00000392902 381 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RPL7P60-201ENST00000397636 735 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL590704.1-201ENST00000402856 794 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RNA5SP39-201ENST00000411245 120 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RPS12P23-201ENST00000419579 400 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 TCEA1P2-201ENST00000420496 906 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL391219.1-201ENST00000422570 483 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL009174.1-201ENST00000426577 416 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 ELOCP6-201ENST00000429066 328 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL050341.1-201ENST00000447743 313 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 ELOCP12-201ENST00000458706 328 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 snoU13.7-201ENST00000459220 104 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RPL37P6-202ENST00000464216 403 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RPS27P23-201ENST00000487608 251 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC069499.1-201ENST00000489433 509 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC023632.4-201ENST00000517783 191 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 MTCO1P49-201ENST00000523429 802 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 MIR5187-201ENST00000583479 76 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC017100.2-201ENST00000584628 355 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 OR1AB1P-201ENST00000585564 761 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC008687.2-201ENST00000597865 520 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC133794.1-201ENST00000602731 914 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC253576.2-201ENST00000618815 580 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC067852.7-201ENST00000623270 535 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL356863.1-201ENST00000623378 1080 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AL356118.1-201ENST00000635272 1078 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 ZNF33CP-201ENST00000432492 2030 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 AC025125.1-201ENST00000624743 1922 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL136520.1-201ENST00000600311 1322 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 MAPK10-372ENST00000641954 3413 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 OR10J6P-201ENST00000289731 930 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 RNU6-1151P-201ENST00000384684 107 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 MIR554-201ENST00000384874 96 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 RPS15AP40-201ENST00000419621 391 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 PAICSP7-201ENST00000419829 962 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL035246.1-201ENST00000433554 1255 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC007389.2-201ENST00000434630 306 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC000041.1-201ENST00000439655 175 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 SETD6P1-201ENST00000444575 317 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 UBE2CP3-201ENST00000502715 450 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 RNU6-416P-201ENST00000516265 103 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC244505.7-201ENST00000599675 272 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC009948.4-201ENST00000604692 675 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL049634.3-201ENST00000604968 457 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AC105429.2-201ENST00000610567 517 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 AL158196.1-201ENST00000616786 434 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms