Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL445493.3-201ENST00000619568 477 ntBASIC3.92□□□□□ -1.78
VPS39Q96JC1 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS39Q96JC1 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 NCAPGP1-201ENST00000505112 1814 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 Y_RNA.110-201ENST00000363220 99 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 MIR525-201ENST00000384978 85 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 SFR1P1-201ENST00000403720 688 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 ATF1P1-201ENST00000406040 927 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 RPL21P110-201ENST00000433345 446 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 VDAC1P3-201ENST00000434069 851 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 NUTF2P3-201ENST00000448540 384 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 RPS23P7-201ENST00000466210 444 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 MIR2114-201ENST00000516645 80 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC087369.1-201ENST00000520775 996 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 OR4A12P-201ENST00000530847 918 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 YPEL5P3-201ENST00000547227 352 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC107954.1-201ENST00000565906 727 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 MIR3939-201ENST00000582614 106 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 VN1R88P-201ENST00000596787 292 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC244505.7-201ENST00000599675 272 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC011468.4-201ENST00000603942 409 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC005962.2-201ENST00000611427 652 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 MIR6716-201ENST00000613413 80 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC006338.2-201ENST00000616864 791 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AL163051.2-201ENST00000618976 735 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 CASC19-261ENST00000641853 1638 ntBASIC3.91□□□□□ -1.78
VPS39Q96JC1 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.91□□□□□ -1.78
VPS39Q96JC1 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS39Q96JC1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS39Q96JC1 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.9□□□□□ -1.78
VPS39Q96JC1 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 RNA5SP443-201ENST00000363083 132 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 SNORA62-201ENST00000365493 153 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 RNU6-650P-201ENST00000365658 111 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 HLFP1-201ENST00000402375 499 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 SSXP10-201ENST00000402595 565 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AL158825.1-201ENST00000414735 521 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 CRYBB2P1-203ENST00000415709 538 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 RPS3AP9-201ENST00000417027 792 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 IFNNP1-201ENST00000429219 553 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 TBCAP1-201ENST00000436520 327 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AL662791.1-201ENST00000441992 928 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 RNFT1P2-201ENST00000443064 757 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 ELOCP13-201ENST00000443934 329 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC010618.1-201ENST00000469924 477 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 RPS27P23-201ENST00000487608 251 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 RPL23AP73-201ENST00000492507 471 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC026979.1-201ENST00000492525 396 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 NIPA2P2-201ENST00000496376 1083 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC004069.2-201ENST00000505438 1114 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 MTND3P24-201ENST00000506306 329 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 HMGB3P15-201ENST00000507326 574 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms