Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OR4A15-201ENST00000314706 1035 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP124-201ENST00000362739 110 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 SNORA11.2-201ENST00000408318 127 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC093578.1-201ENST00000415219 368 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC091390.3-201ENST00000426478 338 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC005002.1-201ENST00000447458 540 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 RAD23BP3-201ENST00000454157 1152 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 RPL9P32-201ENST00000464118 620 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC078918.1-201ENST00000498515 228 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP154-201ENST00000516193 111 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 SNORA70.24-201ENST00000517233 118 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 RFPL1S-203ENST00000539579 330 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC011611.5-201ENST00000552477 578 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AC026368.1-201ENST00000614934 690 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 PABPC1P7-201ENST00000413177 1513 ntBASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 SEPT7P7-201ENST00000420492 1301 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 RNU6-444P-201ENST00000383988 108 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 MIR491-201ENST00000384877 84 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 RN7SKP156-201ENST00000410308 342 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 PGBD4P8-201ENST00000412993 562 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 PAICSP7-201ENST00000419829 962 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 MTCYBP24-201ENST00000420387 1106 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC005517.2-201ENST00000424673 553 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC010881.1-201ENST00000433830 235 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 HMGB1P45-201ENST00000435986 653 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AL590762.3-201ENST00000436372 640 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC104978.1-201ENST00000449387 391 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 RPS15AP1-201ENST00000457423 391 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AP000893.1-201ENST00000474462 794 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 SETP6-201ENST00000479329 568 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC092451.1-201ENST00000480211 153 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 OR5H3P-201ENST00000502817 919 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC005921.1-201ENST00000510589 286 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 HIGD1AP6-201ENST00000521833 279 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 IGJP1-201ENST00000522682 475 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC091516.1-201ENST00000549191 703 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 RN7SL339P-201ENST00000580597 296 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC090616.5-202ENST00000582111 297 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC022069.1-201ENST00000582910 658 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC010928.3-201ENST00000587712 541 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC064801.1-201ENST00000612025 407 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 MIR8084-201ENST00000614105 89 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC009093.8-201ENST00000641769 292 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 AC008725.1-201ENST00000605123 2263 ntBASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.04□□□□□ -1.76
HDDC3Q8N4P3 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 LINC00561-201ENST00000565815 2738 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP52-201ENST00000362448 134 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RNA5SP189-201ENST00000364920 115 ntBASIC4.03□□□□□ -1.76
HDDC3Q8N4P3 RNU6-213P-201ENST00000384051 104 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms