Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ARF4P3-201ENST00000397387 509 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RPS3AP26-201ENST00000398259 784 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AL391361.1-201ENST00000405580 489 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RNA5SP229-201ENST00000410809 99 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RNU2-71P-201ENST00000411395 189 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC096644.3-201ENST00000416788 338 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC005517.2-201ENST00000424673 553 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC104837.2-201ENST00000427236 424 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RPS3AP54-201ENST00000435535 734 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC069277.2-201ENST00000454211 432 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RPS12P20-201ENST00000464109 380 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC010625.1-201ENST00000511296 403 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 SNORA9.3-201ENST00000516383 129 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RNA5SP402-201ENST00000517148 110 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC022826.1-201ENST00000519383 805 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 SPATA8-AS1-202ENST00000560888 392 ntTSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 UBE2FP2-201ENST00000566646 462 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC009163.5-201ENST00000575421 637 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC068870.2-201ENST00000620635 389 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 MIR6806-201ENST00000622141 64 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 AC090897.3-201ENST00000636973 1157 ntBASIC1.9□□□□□ -2.11
LINC00643Q86TS7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
LINC00643Q86TS7 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 CUL4AP1-201ENST00000514750 1863 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL672167.1-206ENST00000356293 943 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 RNU6-1077P-201ENST00000410506 102 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC004987.3-201ENST00000413879 771 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL513175.2-201ENST00000422071 443 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL389915.1-201ENST00000422463 466 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 SUMO1P4-201ENST00000429430 302 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 RPS15AP7-201ENST00000439294 405 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 Z95152.1-201ENST00000453556 656 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC234775.1-201ENST00000454247 670 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 UBDP1-202ENST00000457888 382 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC010326.1-201ENST00000462726 602 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC023424.2-201ENST00000493479 777 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 MTATP6P22-201ENST00000507369 598 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC011853.1-201ENST00000518911 454 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 RANP9-201ENST00000519957 271 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 OR4R3P-201ENST00000525084 838 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC006116.5-201ENST00000591936 559 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC015871.2-201ENST00000603605 948 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL160237.3-201ENST00000604114 1013 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL031320.1-201ENST00000604177 357 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC068831.7-201ENST00000616954 363 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 MIR6749-201ENST00000617008 69 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 RARSP1-201ENST00000542842 1418 ntBASIC1.89□□□□□ -2.11
LINC00643Q86TS7 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
LINC00643Q86TS7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 163.3 ms