Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.73□□□□□ -1.81
SHHQ15465 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
SHHQ15465 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
SHHQ15465 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 AC007656.2-201ENST00000624902 4547 ntBASIC3.73□□□□□ -1.81
SHHQ15465 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
SHHQ15465 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 AL139413.1-201ENST00000421309 217 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 NDUFB1P1-201ENST00000435191 180 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 AC092013.1-201ENST00000438795 332 ntBASIC3.72□□□□□ -1.81
SHHQ15465 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 AC099563.1-201ENST00000456086 418 ntBASIC3.72□□□□□ -1.81
SHHQ15465 OR7L1P-201ENST00000456181 380 ntBASIC3.72□□□□□ -1.81
SHHQ15465 RNU6-775P-201ENST00000459318 96 ntBASIC3.72□□□□□ -1.81
SHHQ15465 S100A11P1-201ENST00000477525 312 ntBASIC3.72□□□□□ -1.81
SHHQ15465 OR2A20P-203ENST00000498397 1268 ntBASIC3.72□□□□□ -1.81
SHHQ15465 HMGB1P21-201ENST00000502313 581 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 RPL7L1P13-201ENST00000511702 739 ntBASIC3.72□□□□□ -1.81
SHHQ15465 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.72□□□□□ -1.81
SHHQ15465 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 AC092747.2-201ENST00000545069 983 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 AL162713.1-201ENST00000604480 262 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC117490.2-201ENST00000610042 594 ntBASIC3.72□□□□□ -1.81
SHHQ15465 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 AC116447.1-201ENST00000613153 453 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC020658.4-201ENST00000613987 684 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AL590410.1-201ENST00000617925 333 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC092159.4-201ENST00000624944 550 ntBASIC3.72□□□□□ -1.81
SHHQ15465 OR5AC4P-202ENST00000642086 985 ntBASIC3.72□□□□□ -1.81
SHHQ15465 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.72□□□□□ -1.81
SHHQ15465 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SHHQ15465 AL133412.1-201ENST00000380194 2992 ntBASIC3.72□□□□□ -1.81
SHHQ15465 AC008725.1-201ENST00000605123 2263 ntBASIC3.72□□□□□ -1.81
SHHQ15465 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.81
SHHQ15465 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.71□□□□□ -1.81
SHHQ15465 SAGE2P-201ENST00000420011 2126 ntBASIC3.71□□□□□ -1.81
SHHQ15465 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
SHHQ15465 DDX6P1-205ENST00000441966 1436 ntBASIC3.71□□□□□ -1.82
SHHQ15465 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHHQ15465 AL356274.2-201ENST00000624379 3752 ntBASIC3.71□□□□□ -1.82
SHHQ15465 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
SHHQ15465 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SHHQ15465 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHHQ15465 SNORD74.4-201ENST00000364129 80 ntBASIC3.71□□□□□ -1.82
SHHQ15465 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHHQ15465 SNORD65-201ENST00000391079 73 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AL034374.1-201ENST00000406329 351 ntBASIC3.71□□□□□ -1.82
SHHQ15465 MTHFD2P2-201ENST00000407725 247 ntBASIC3.71□□□□□ -1.82
SHHQ15465 LIPT1P1-201ENST00000415870 1186 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.71□□□□□ -1.82
SHHQ15465 MTCO3P21-201ENST00000430791 643 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.71□□□□□ -1.82
SHHQ15465 SETP5-201ENST00000437270 562 ntBASIC3.71□□□□□ -1.82
SHHQ15465 CACYBPP1-201ENST00000438592 684 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AC005002.1-201ENST00000447458 540 ntBASIC3.71□□□□□ -1.82
SHHQ15465 HMGB1P5-202ENST00000451497 985 ntBASIC3.71□□□□□ -1.82
SHHQ15465 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.71□□□□□ -1.82
SHHQ15465 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.71□□□□□ -1.82
SHHQ15465 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.71□□□□□ -1.82
SHHQ15465 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.71□□□□□ -1.82
SHHQ15465 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.71□□□□□ -1.82
SHHQ15465 AC068714.1-201ENST00000559623 800 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.71□□□□□ -1.82
SHHQ15465 AC068020.1-201ENST00000594215 661 ntBASIC3.71□□□□□ -1.82
SHHQ15465 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.71□□□□□ -1.82
SHHQ15465 AC084373.1-201ENST00000603311 235 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AC010200.2-201ENST00000605098 235 ntBASIC3.71□□□□□ -1.82
SHHQ15465 OR6R2P-201ENST00000609216 300 ntBASIC3.71□□□□□ -1.82
SHHQ15465 AP003400.6-201ENST00000624698 740 ntBASIC3.71□□□□□ -1.82
SHHQ15465 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
SHHQ15465 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
SHHQ15465 AC095050.2-201ENST00000510748 1458 ntBASIC3.71□□□□□ -1.82
SHHQ15465 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SHHQ15465 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 AC011155.1-201ENST00000316512 456 ntBASIC3.7□□□□□ -1.82
SHHQ15465 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 RNU6-603P-201ENST00000411403 107 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms