Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 GAPDHP56-201ENST00000506031 988 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 SNORD60.2-201ENST00000516883 86 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 RNU6-201P-201ENST00000517100 61 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC022616.6-201ENST00000520479 119 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 AF279873.1-201ENST00000523393 313 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 MIR3167-201ENST00000579623 85 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 AP000769.2-201ENST00000602344 396 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 SNRPGP17-201ENST00000603780 214 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC011468.4-201ENST00000603942 409 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC018445.2-201ENST00000622987 260 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC010149.2-201ENST00000637608 315 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 AC083837.1-201ENST00000565297 2994 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 DDX18P4-201ENST00000511690 1966 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.87□□□□□ -1.47
SOX4Q06945 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
SOX4Q06945 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 NACAP2-201ENST00000318548 624 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RPL7P26-201ENST00000333817 754 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 SNORA33.2-201ENST00000365413 134 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 SNORD42.2-201ENST00000365570 69 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 RNU6-43P-201ENST00000384302 107 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX4Q06945 RNU6-1148P-201ENST00000410992 104 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 SLC35E1P1-201ENST00000419313 864 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 OR1AA1P-201ENST00000419597 916 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 MTCYBP8-201ENST00000422855 651 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 GSTM5P1-201ENST00000434751 660 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX4Q06945 RPS23P9-201ENST00000448848 438 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RPL7P15-201ENST00000461190 712 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 MRPS17P3-201ENST00000465453 385 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 ST13P14-201ENST00000474095 734 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RN7SL222P-201ENST00000476452 299 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RPS21P4-201ENST00000487122 248 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RN7SL30P-201ENST00000488416 306 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC006499.3-201ENST00000506077 748 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 RNU6-941P-201ENST00000516346 108 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 Y_RNA.691-201ENST00000516611 103 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 IGLV2-28-201ENST00000520681 304 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AC022861.1-201ENST00000522981 663 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AP004607.2-201ENST00000533949 322 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC5.87□□□□□ -1.47
SOX4Q06945 AL049779.2-201ENST00000553847 315 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 SCOCP1-201ENST00000554676 349 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC079075.1-201ENST00000559543 878 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC124303.1-201ENST00000605703 360 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SOX4Q06945 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.87□□□□□ -1.47
SOX4Q06945 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX4Q06945 AC018628.1-201ENST00000624147 3819 ntBASIC5.87□□□□□ -1.47
SOX4Q06945 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX4Q06945 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.86□□□□□ -1.47
SOX4Q06945 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 AC006206.1-201ENST00000544842 3387 ntBASIC5.86□□□□□ -1.47
SOX4Q06945 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
SOX4Q06945 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX4Q06945 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX4Q06945 AL512646.1-201ENST00000269395 1077 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms