Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPS15AP1-201ENST00000457423 391 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 RPL21P104-201ENST00000464143 478 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 RPL37P6-202ENST00000464216 403 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 VN1R17P-201ENST00000472048 1090 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA3P55318 SCARNA20.6-201ENST00000517251 106 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA3P55318 MIR3690-201ENST00000580266 75 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA3P55318 AC091488.1-201ENST00000604239 660 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC004832.5-201ENST00000608677 401 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AL354976.1-201ENST00000613843 387 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA3P55318 SNORD39.4-201ENST00000620099 78 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AL356490.1-201ENST00000623079 479 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
FOXA3P55318 AC019080.5-201ENST00000624891 757 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA3P55318 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA3P55318 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA3P55318 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA3P55318 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA3P55318 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
FOXA3P55318 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
FOXA3P55318 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA3P55318 AC093831.2-201ENST00000624393 3427 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA3P55318 SNORA51.2-201ENST00000364595 132 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
FOXA3P55318 TANK-203ENST00000402568 878 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA3P55318 PVALB-202ENST00000404171 422 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA3P55318 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA3P55318 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA3P55318 OR2B8P-201ENST00000432841 938 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 RPS20P21-201ENST00000466859 343 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AC108860.1-201ENST00000484521 383 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA3P55318 SNORA70.18-201ENST00000516696 98 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXA3P55318 CENPUP2-201ENST00000555897 1186 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXA3P55318 AC055876.1-202ENST00000567053 138 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA3P55318 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 AC006116.7-201ENST00000590141 756 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXA3P55318 AL133393.1-201ENST00000603277 287 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AC006023.2-201ENST00000609916 167 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 AC005344.1-201ENST00000613391 459 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA3P55318 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA3P55318 CR392039.4-201ENST00000624968 501 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA3P55318 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA3P55318 AC119674.1-207ENST00000641355 633 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 MAPK6PS3-201ENST00000403865 2162 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 AP004289.2-201ENST00000444413 1457 ntBASIC2.51□□□□□ -2.01
FOXA3P55318 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
FOXA3P55318 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 AL355578.1-201ENST00000607405 1328 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AC090337.1-201ENST00000579651 2074 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC2.5□□□□□ -2.01
FOXA3P55318 RNU6-600P-201ENST00000362524 99 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 SNORA62-201ENST00000365493 153 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA3P55318 AL022722.2-201ENST00000402519 180 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 Z99755.1-201ENST00000414048 380 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC2.5□□□□□ -2.01
FOXA3P55318 RCC2P2-201ENST00000422174 918 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 YY1P1-201ENST00000427625 668 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 BRWD1P3-201ENST00000428816 390 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC244505.4-201ENST00000434905 287 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 SSXP5-201ENST00000443473 287 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 RPS27P5-201ENST00000444247 244 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AC006326.1-201ENST00000445465 787 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA3P55318 RN7SL75P-201ENST00000461926 281 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 RPS7P7-201ENST00000463499 571 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC093853.1-201ENST00000515689 483 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA3P55318 OR6C73P-201ENST00000546432 358 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA3P55318 AC087499.8-201ENST00000578406 226 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms