Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RNA5SP56-201ENST00000410277 118 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AL590139.1-201ENST00000416267 400 ntBASIC4.89□□□□□ -1.63
NEK3P51956 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 TXNL1P1-201ENST00000429528 554 ntBASIC4.89□□□□□ -1.63
NEK3P51956 NRBF2P3-201ENST00000432731 865 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC127537.2-201ENST00000439258 465 ntBASIC4.89□□□□□ -1.63
NEK3P51956 RPL36AP15-201ENST00000444514 266 ntBASIC4.89□□□□□ -1.63
NEK3P51956 VN1R32P-201ENST00000452234 905 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.89□□□□□ -1.63
NEK3P51956 SUMO2P2-201ENST00000456482 255 ntBASIC4.89□□□□□ -1.63
NEK3P51956 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.89□□□□□ -1.63
NEK3P51956 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 AC087312.1-201ENST00000471411 480 ntBASIC4.89□□□□□ -1.63
NEK3P51956 RPS3AP22-201ENST00000488297 769 ntBASIC4.89□□□□□ -1.63
NEK3P51956 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.89□□□□□ -1.63
NEK3P51956 RNA5SP392-201ENST00000516905 112 ntBASIC4.89□□□□□ -1.63
NEK3P51956 Y_RNA.719-201ENST00000517156 106 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC239860.2-201ENST00000525886 270 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC137768.1-201ENST00000549998 553 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.89□□□□□ -1.63
NEK3P51956 RN7SL176P-201ENST00000580352 264 ntBASIC4.89□□□□□ -1.63
NEK3P51956 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 AL357094.1-201ENST00000603845 844 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC018638.7-201ENST00000605836 1114 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC010424.2-201ENST00000607594 443 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC004943.3-201ENST00000624116 600 ntBASIC4.89□□□□□ -1.63
NEK3P51956 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 AC103706.2-201ENST00000638080 240 ntBASIC4.89□□□□□ -1.63
NEK3P51956 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NEK3P51956 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.89□□□□□ -1.63
NEK3P51956 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
NEK3P51956 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.89□□□□□ -1.63
NEK3P51956 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
NEK3P51956 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.88□□□□□ -1.63
NEK3P51956 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 NCLP2-201ENST00000416078 1462 ntBASIC4.88□□□□□ -1.63
NEK3P51956 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.88□□□□□ -1.63
NEK3P51956 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.88□□□□□ -1.63
NEK3P51956 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 AC097714.1-201ENST00000511272 1647 ntBASIC4.88□□□□□ -1.63
NEK3P51956 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NEK3P51956 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NEK3P51956 RNU6-761P-201ENST00000384148 107 ntBASIC4.88□□□□□ -1.63
NEK3P51956 RNU6-837P-201ENST00000391056 108 ntBASIC4.88□□□□□ -1.63
NEK3P51956 RNA5SP345-201ENST00000410646 108 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.88□□□□□ -1.63
NEK3P51956 BX510359.2-201ENST00000417920 305 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 AC006548.1-201ENST00000427470 102 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.88□□□□□ -1.63
NEK3P51956 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.88□□□□□ -1.63
NEK3P51956 RPL23AP35-201ENST00000451906 501 ntBASIC4.88□□□□□ -1.63
NEK3P51956 DDX39BP2-208ENST00000453923 258 ntBASIC4.88□□□□□ -1.63
NEK3P51956 RPS20P24-201ENST00000457473 361 ntBASIC4.88□□□□□ -1.63
NEK3P51956 snoU13.3-201ENST00000459441 104 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC011005.3-201ENST00000491624 395 ntBASIC4.88□□□□□ -1.63
NEK3P51956 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.88□□□□□ -1.63
NEK3P51956 RN7SKP276-201ENST00000516242 268 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.88□□□□□ -1.63
NEK3P51956 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.88□□□□□ -1.63
NEK3P51956 AC079075.1-201ENST00000559543 878 ntBASIC4.88□□□□□ -1.63
NEK3P51956 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.88□□□□□ -1.63
NEK3P51956 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.88□□□□□ -1.63
NEK3P51956 AC006539.2-201ENST00000601729 572 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC106791.2-201ENST00000604680 391 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC124312.4-201ENST00000605533 310 ntBASIC4.88□□□□□ -1.63
NEK3P51956 RNU6-88P-201ENST00000606801 100 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AC007497.1-201ENST00000610421 561 ntBASIC4.88□□□□□ -1.63
NEK3P51956 MIR6748-201ENST00000610433 71 ntBASIC4.88□□□□□ -1.63
NEK3P51956 FAM27B-201ENST00000610601 213 ntBASIC4.88□□□□□ -1.63
NEK3P51956 AL359757.1-201ENST00000623176 255 ntBASIC4.88□□□□□ -1.63
NEK3P51956 CR381572.1-201ENST00000625098 102 ntBASIC4.88□□□□□ -1.63
NEK3P51956 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NEK3P51956 AP002907.1-201ENST00000606361 1430 ntBASIC4.88□□□□□ -1.63
NEK3P51956 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
NEK3P51956 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NEK3P51956 AC107068.1-201ENST00000563286 4218 ntBASIC4.87□□□□□ -1.63
NEK3P51956 AC017104.4-201ENST00000636283 1592 ntBASIC4.87□□□□□ -1.63
NEK3P51956 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
NEK3P51956 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.87□□□□□ -1.63
NEK3P51956 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.87□□□□□ -1.63
NEK3P51956 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NEK3P51956 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NEK3P51956 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms