Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CUX1P39880 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.15□□□□□ -1.59
CUX1P39880 AC108206.1-201ENST00000570186 4159 ntBASIC5.15□□□□□ -1.59
CUX1P39880 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CUX1P39880 AL356489.2-201ENST00000566968 3528 ntBASIC5.14□□□□□ -1.59
CUX1P39880 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CUX1P39880 MIR30E-201ENST00000362104 92 ntBASIC5.14□□□□□ -1.59
CUX1P39880 RPL7P25-201ENST00000404151 721 ntBASIC5.14□□□□□ -1.59
CUX1P39880 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.14□□□□□ -1.59
CUX1P39880 RPS12P18-201ENST00000442381 270 ntBASIC5.14□□□□□ -1.59
CUX1P39880 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC5.14□□□□□ -1.59
CUX1P39880 SLC31A1P1-201ENST00000451221 567 ntBASIC5.14□□□□□ -1.59
CUX1P39880 DNAJC19P8-201ENST00000452887 259 ntBASIC5.14□□□□□ -1.59
CUX1P39880 AC022882.1-201ENST00000532142 501 ntBASIC5.14□□□□□ -1.59
CUX1P39880 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
CUX1P39880 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
CUX1P39880 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC5.14□□□□□ -1.59
CUX1P39880 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 OR1S2-201ENST00000302592 978 ntBASIC5.13□□□□□ -1.59
CUX1P39880 AP002088.1-201ENST00000382740 395 ntBASIC5.13□□□□□ -1.59
CUX1P39880 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.13□□□□□ -1.59
CUX1P39880 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.13□□□□□ -1.59
CUX1P39880 AC112492.1-201ENST00000449607 712 ntBASIC5.13□□□□□ -1.59
CUX1P39880 MTCO3P16-201ENST00000454456 754 ntBASIC5.13□□□□□ -1.59
CUX1P39880 RPS4XP22-201ENST00000480755 780 ntBASIC5.13□□□□□ -1.59
CUX1P39880 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC5.13□□□□□ -1.59
CUX1P39880 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 FAM35DP-201ENST00000323387 2712 ntBASIC5.13□□□□□ -1.59
CUX1P39880 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CUX1P39880 AC093849.1-201ENST00000563631 2209 ntBASIC5.13□□□□□ -1.59
CUX1P39880 AC104297.1-201ENST00000393779 870 ntBASIC5.13□□□□□ -1.59
CUX1P39880 RPS4XP8-201ENST00000402039 771 ntBASIC5.13□□□□□ -1.59
CUX1P39880 RN7SKP56-201ENST00000410513 331 ntBASIC5.13□□□□□ -1.59
CUX1P39880 AL645937.1-202ENST00000421799 937 ntBASIC5.13□□□□□ -1.59
CUX1P39880 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.13□□□□□ -1.59
CUX1P39880 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.13□□□□□ -1.59
CUX1P39880 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.13□□□□□ -1.59
CUX1P39880 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.13□□□□□ -1.59
CUX1P39880 AC139713.2-210ENST00000641741 992 ntBASIC5.13□□□□□ -1.59
CUX1P39880 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC5.12□□□□□ -1.59
CUX1P39880 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
CUX1P39880 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CUX1P39880 SNORD15B-201ENST00000384714 146 ntBASIC5.12□□□□□ -1.59
CUX1P39880 AC073069.1-201ENST00000428657 441 ntBASIC5.12□□□□□ -1.59
CUX1P39880 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.12□□□□□ -1.59
CUX1P39880 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.12□□□□□ -1.59
CUX1P39880 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC5.12□□□□□ -1.59
CUX1P39880 MTCO3P20-201ENST00000454926 688 ntBASIC5.12□□□□□ -1.59
CUX1P39880 RNU1-143P-201ENST00000516296 146 ntBASIC5.12□□□□□ -1.59
CUX1P39880 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
CUX1P39880 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CUX1P39880 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC5.12□□□□□ -1.59
CUX1P39880 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.12□□□□□ -1.59
CUX1P39880 HMGB1P50-201ENST00000605814 607 ntBASIC5.12□□□□□ -1.59
CUX1P39880 U1.23-201ENST00000610293 146 ntBASIC5.12□□□□□ -1.59
CUX1P39880 RNU1-68P-201ENST00000615382 146 ntBASIC5.12□□□□□ -1.59
CUX1P39880 AC231759.1-201ENST00000616455 597 ntBASIC5.12□□□□□ -1.59
CUX1P39880 U1.39-201ENST00000621562 146 ntBASIC5.12□□□□□ -1.59
CUX1P39880 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.12□□□□□ -1.59
CUX1P39880 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC5.11□□□□□ -1.59
CUX1P39880 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CUX1P39880 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CUX1P39880 CD2-201ENST00000369477 478 ntTSL 2 BASIC5.11□□□□□ -1.59
CUX1P39880 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC5.11□□□□□ -1.59
CUX1P39880 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.11□□□□□ -1.59
CUX1P39880 RPL32P28-201ENST00000443577 397 ntBASIC5.11□□□□□ -1.59
CUX1P39880 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.11□□□□□ -1.59
CUX1P39880 AL133477.1-201ENST00000457472 514 ntBASIC5.11□□□□□ -1.59
CUX1P39880 PRDX3P4-201ENST00000470828 747 ntBASIC5.11□□□□□ -1.59
CUX1P39880 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.11□□□□□ -1.59
CUX1P39880 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.11□□□□□ -1.59
CUX1P39880 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CUX1P39880 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CUX1P39880 RPL6P21-201ENST00000418672 846 ntBASIC5.1□□□□□ -1.59
CUX1P39880 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.1□□□□□ -1.59
CUX1P39880 RPL12P26-201ENST00000452430 487 ntBASIC5.1□□□□□ -1.59
CUX1P39880 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.1□□□□□ -1.59
CUX1P39880 AC126389.1-201ENST00000477436 290 ntBASIC5.1□□□□□ -1.59
CUX1P39880 AL035404.1-201ENST00000497982 568 ntBASIC5.1□□□□□ -1.59
CUX1P39880 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC5.1□□□□□ -1.59
CUX1P39880 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.1□□□□□ -1.59
CUX1P39880 AL157394.1-201ENST00000562983 1224 ntBASIC5.1□□□□□ -1.59
CUX1P39880 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.1□□□□□ -1.59
CUX1P39880 ELOCP29-201ENST00000588193 334 ntBASIC5.1□□□□□ -1.59
CUX1P39880 AL365400.2-201ENST00000605604 902 ntBASIC5.1□□□□□ -1.59
CUX1P39880 OR2AS2P-201ENST00000606902 342 ntBASIC5.1□□□□□ -1.59
CUX1P39880 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CUX1P39880 AC097634.1-201ENST00000604491 2467 ntBASIC5.1□□□□□ -1.59
CUX1P39880 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
CUX1P39880 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
CUX1P39880 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC5.1□□□□□ -1.59
CUX1P39880 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC5.1□□□□□ -1.59
CUX1P39880 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC5.09□□□□□ -1.59
CUX1P39880 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CUX1P39880 AL592148.1-201ENST00000413568 445 ntBASIC5.09□□□□□ -1.59
CUX1P39880 KRTAP19-11P-201ENST00000439851 104 ntBASIC5.09□□□□□ -1.59
CUX1P39880 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms