Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL592148.1-201ENST00000413568 445 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.05□□□□□ -1.76
COL18A1P39060 HMGN2P7-201ENST00000456186 273 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 RPS4XP22-201ENST00000480755 780 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.05□□□□□ -1.76
COL18A1P39060 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.05□□□□□ -1.76
COL18A1P39060 AL034351.1-201ENST00000605288 668 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 uc_338.1-201ENST00000612113 180 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 AC000403.1-201ENST00000613696 3585 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 FAM35DP-201ENST00000323387 2712 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL18A1P39060 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL18A1P39060 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL18A1P39060 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.05□□□□□ -1.76
COL18A1P39060 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL18A1P39060 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL18A1P39060 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL18A1P39060 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.04□□□□□ -1.76
COL18A1P39060 HMGB1P16-201ENST00000447155 540 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 NARSP2-201ENST00000518524 679 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.04□□□□□ -1.76
COL18A1P39060 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.04□□□□□ -1.76
COL18A1P39060 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.04□□□□□ -1.76
COL18A1P39060 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL18A1P39060 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 KPNA2P2-201ENST00000419546 1489 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
COL18A1P39060 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL18A1P39060 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL18A1P39060 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL18A1P39060 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL18A1P39060 RNU4-82P-201ENST00000362443 140 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 SNORD15B-201ENST00000384714 146 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.04□□□□□ -1.76
COL18A1P39060 AL136097.1-201ENST00000456945 913 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AL133477.1-201ENST00000457472 514 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC090543.2-201ENST00000483963 348 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC079600.2-201ENST00000550076 130 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.04□□□□□ -1.76
COL18A1P39060 AP005262.1-201ENST00000582646 997 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC024153.1-201ENST00000603103 365 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AL365400.2-201ENST00000605604 902 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 AC231759.1-201ENST00000616455 597 ntBASIC4.04□□□□□ -1.76
COL18A1P39060 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
COL18A1P39060 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL18A1P39060 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.03□□□□□ -1.76
COL18A1P39060 AL136360.1-201ENST00000503377 1900 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
COL18A1P39060 AL022322.2-201ENST00000624072 20397 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL18A1P39060 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.03□□□□□ -1.76
COL18A1P39060 MTCO1P8-201ENST00000416914 1523 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 AC108734.1-201ENST00000439549 399 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 UBE2V2P4-201ENST00000447495 259 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.03□□□□□ -1.76
COL18A1P39060 AC126389.1-201ENST00000477436 290 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL18A1P39060 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.03□□□□□ -1.76
COL18A1P39060 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 TUG1_1.1-201ENST00000610654 145 ntBASIC4.03□□□□□ -1.76
COL18A1P39060 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL18A1P39060 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL18A1P39060 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.03□□□□□ -1.77
COL18A1P39060 RPS24P12-201ENST00000402084 394 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 RNA5SP31-201ENST00000411144 127 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AC019097.1-201ENST00000424783 735 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.02□□□□□ -1.77
COL18A1P39060 AC103783.1-201ENST00000520506 373 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 COX6CP8-201ENST00000522620 226 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.02□□□□□ -1.77
COL18A1P39060 KC877982.1-201ENST00000602313 470 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AC004832.5-201ENST00000608677 401 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AC132825.8-201ENST00000640783 297 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.02□□□□□ -1.77
COL18A1P39060 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL18A1P39060 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL18A1P39060 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.02□□□□□ -1.77
COL18A1P39060 RPS4XP8-201ENST00000402039 771 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 AL139413.1-201ENST00000421309 217 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.02□□□□□ -1.77
COL18A1P39060 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.02□□□□□ -1.77
COL18A1P39060 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.02□□□□□ -1.77
COL18A1P39060 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.02□□□□□ -1.77
COL18A1P39060 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 RPL23AP92-201ENST00000603609 255 ntBASIC4.02□□□□□ -1.77
COL18A1P39060 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
COL18A1P39060 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL18A1P39060 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL18A1P39060 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.01□□□□□ -1.77
COL18A1P39060 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL18A1P39060 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms