Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC009597.2-201ENST00000604659 592 ntBASIC4.94□□□□□ -1.62
MSX2P35548 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX2P35548 AC064836.2-201ENST00000609491 462 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC116447.1-201ENST00000613153 453 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC015914.2-201ENST00000618167 288 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 AP002505.2-201ENST00000623585 696 ntBASIC4.94□□□□□ -1.62
MSX2P35548 ATE1-AS1-202ENST00000636460 506 ntBASIC4.94□□□□□ -1.62
MSX2P35548 OR55B1P-203ENST00000641518 2602 ntBASIC4.94□□□□□ -1.62
MSX2P35548 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 AC005332.5-201ENST00000591222 2919 ntBASIC4.94□□□□□ -1.62
MSX2P35548 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
MSX2P35548 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
MSX2P35548 AC107027.3-201ENST00000565095 3473 ntBASIC4.93□□□□□ -1.62
MSX2P35548 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.93□□□□□ -1.62
MSX2P35548 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 Y_RNA.263-201ENST00000364659 114 ntBASIC4.93□□□□□ -1.62
MSX2P35548 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 OR52E6-202ENST00000379946 954 ntBASIC4.93□□□□□ -1.62
MSX2P35548 MIR506-201ENST00000384998 124 ntBASIC4.93□□□□□ -1.62
MSX2P35548 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 HSPA8P15-201ENST00000401676 786 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AL133388.1-201ENST00000404509 287 ntBASIC4.93□□□□□ -1.62
MSX2P35548 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
MSX2P35548 MTCO1P20-201ENST00000425366 358 ntBASIC4.93□□□□□ -1.62
MSX2P35548 RPS29P14-201ENST00000431518 171 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC109583.1-201ENST00000432156 268 ntBASIC4.93□□□□□ -1.62
MSX2P35548 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
MSX2P35548 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.93□□□□□ -1.62
MSX2P35548 RABEPKP1-201ENST00000440529 1026 ntBASIC4.93□□□□□ -1.62
MSX2P35548 MTND6P13-201ENST00000443510 523 ntBASIC4.93□□□□□ -1.62
MSX2P35548 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AL672138.1-201ENST00000450604 1015 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AL590365.1-201ENST00000450788 243 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC104634.1-201ENST00000452720 462 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 AL356981.1-201ENST00000454879 684 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC087312.1-201ENST00000471411 480 ntBASIC4.93□□□□□ -1.62
MSX2P35548 NDUFA5P12-201ENST00000503796 343 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC025458.1-201ENST00000506046 166 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC021242.1-201ENST00000507315 2035 ntBASIC4.93□□□□□ -1.62
MSX2P35548 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AC105914.1-201ENST00000511798 226 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.93□□□□□ -1.62
MSX2P35548 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX2P35548 NMNAT1P1-201ENST00000554095 876 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AC007448.1-201ENST00000582714 234 ntBASIC4.93□□□□□ -1.62
MSX2P35548 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AC005261.5-201ENST00000596280 355 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.93□□□□□ -1.62
MSX2P35548 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AC010338.1-201ENST00000621823 717 ntBASIC4.93□□□□□ -1.62
MSX2P35548 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.93□□□□□ -1.62
MSX2P35548 AC116563.2-201ENST00000624751 535 ntBASIC4.93□□□□□ -1.62
MSX2P35548 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.93□□□□□ -1.62
MSX2P35548 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
MSX2P35548 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX2P35548 AL445437.1-201ENST00000623157 3087 ntBASIC4.93□□□□□ -1.62
MSX2P35548 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX2P35548 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX2P35548 BTBD10P1-201ENST00000549824 1352 ntBASIC4.92□□□□□ -1.62
MSX2P35548 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSX2P35548 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
MSX2P35548 OR4G11P-202ENST00000642116 1414 ntBASIC4.92□□□□□ -1.62
MSX2P35548 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
MSX2P35548 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSX2P35548 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX2P35548 RNU4-44P-201ENST00000363050 141 ntBASIC4.92□□□□□ -1.62
MSX2P35548 RNU2-6P-201ENST00000411404 190 ntBASIC4.92□□□□□ -1.62
MSX2P35548 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms