Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC011755.1-201ENST00000623763 2049 ntBASIC5.99□□□□□ -1.45
MSX1P28360 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.99□□□□□ -1.45
MSX1P28360 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
MSX1P28360 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.99□□□□□ -1.45
MSX1P28360 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
MSX1P28360 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX1P28360 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX1P28360 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 RNU6-562P-201ENST00000362731 107 ntBASIC5.98□□□□□ -1.45
MSX1P28360 Y_RNA.117-201ENST00000363294 101 ntBASIC5.98□□□□□ -1.45
MSX1P28360 Y_RNA.152-201ENST00000363578 100 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RNU6-450P-201ENST00000364654 107 ntBASIC5.98□□□□□ -1.45
MSX1P28360 SNORD115-7-201ENST00000365306 82 ntBASIC5.98□□□□□ -1.45
MSX1P28360 Y_RNA.380-201ENST00000365663 111 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RHOT1P2-201ENST00000366423 333 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RNU6-278P-201ENST00000390945 109 ntBASIC5.98□□□□□ -1.45
MSX1P28360 MIR450B-201ENST00000401182 78 ntBASIC5.98□□□□□ -1.45
MSX1P28360 AL023284.3-201ENST00000407767 334 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RNU6-1050P-201ENST00000410388 107 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RN7SKP121-201ENST00000410842 305 ntBASIC5.98□□□□□ -1.45
MSX1P28360 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 AL389925.1-201ENST00000432257 728 ntBASIC5.98□□□□□ -1.45
MSX1P28360 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 RPL21P93-201ENST00000480465 489 ntBASIC5.98□□□□□ -1.45
MSX1P28360 RN7SL809P-201ENST00000482040 297 ntBASIC5.98□□□□□ -1.45
MSX1P28360 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 HMGB3P17-201ENST00000504195 649 ntBASIC5.98□□□□□ -1.45
MSX1P28360 AC113367.2-201ENST00000505749 160 ntBASIC5.98□□□□□ -1.45
MSX1P28360 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX1P28360 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX1P28360 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.98□□□□□ -1.45
MSX1P28360 AL137100.2-201ENST00000555786 315 ntBASIC5.98□□□□□ -1.45
MSX1P28360 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.98□□□□□ -1.45
MSX1P28360 COX6CP3-201ENST00000580869 223 ntBASIC5.98□□□□□ -1.45
MSX1P28360 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
MSX1P28360 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 IGKV2OR2-10-201ENST00000613976 311 ntBASIC5.98□□□□□ -1.45
MSX1P28360 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.98□□□□□ -1.45
MSX1P28360 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 AC010325.3-201ENST00000641084 394 ntBASIC5.98□□□□□ -1.45
MSX1P28360 THAP12P4-201ENST00000528321 2266 ntBASIC5.98□□□□□ -1.45
MSX1P28360 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.98□□□□□ -1.45
MSX1P28360 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 AC007114.2-201ENST00000576014 4281 ntBASIC5.98□□□□□ -1.45
MSX1P28360 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
MSX1P28360 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
MSX1P28360 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
MSX1P28360 CYP2G2P-201ENST00000594920 1485 ntBASIC5.97□□□□□ -1.45
MSX1P28360 LINC01613-201ENST00000561476 2780 ntBASIC5.97□□□□□ -1.45
MSX1P28360 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 RNA5SP333-201ENST00000363466 118 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RNA5SP512-201ENST00000364550 120 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RNA5SP334-201ENST00000364825 118 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RNU6-823P-201ENST00000391042 103 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.97□□□□□ -1.45
MSX1P28360 PRELID1P1-201ENST00000403549 660 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RPL12P23-201ENST00000405880 490 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RNA5SP115-201ENST00000411160 107 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 E2F6P2-201ENST00000420708 748 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RPL36P19-201ENST00000430744 301 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RPL36AP6-201ENST00000435770 321 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 EIF5AP4-201ENST00000441206 465 ntBASIC5.97□□□□□ -1.45
MSX1P28360 RAC1P7-201ENST00000445367 377 ntBASIC5.97□□□□□ -1.45
MSX1P28360 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 AP001992.1-205ENST00000462248 379 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC005017.1-201ENST00000482002 490 ntBASIC5.97□□□□□ -1.45
MSX1P28360 ATP5LP5-201ENST00000483050 299 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SNX18P24-201ENST00000505249 671 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC093870.1-201ENST00000506837 213 ntBASIC5.97□□□□□ -1.45
MSX1P28360 SLC25A15P5-201ENST00000508033 253 ntBASIC5.97□□□□□ -1.45
MSX1P28360 HIGD1AP13-201ENST00000509878 289 ntBASIC5.97□□□□□ -1.45
MSX1P28360 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 RNU6-475P-201ENST00000516073 104 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.97□□□□□ -1.45
MSX1P28360 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.97□□□□□ -1.45
MSX1P28360 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.97□□□□□ -1.45
MSX1P28360 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
MSX1P28360 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms