Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SDC1P18827 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 AC016716.1-201ENST00000265882 708 ntBASIC3.58□□□□□ -1.84
SDC1P18827 SPRR2C-201ENST00000290702 219 ntBASIC3.58□□□□□ -1.84
SDC1P18827 MIR372-201ENST00000362225 67 ntBASIC3.58□□□□□ -1.84
SDC1P18827 RNU6-353P-201ENST00000364266 108 ntBASIC3.58□□□□□ -1.84
SDC1P18827 RNU6-213P-201ENST00000384051 104 ntBASIC3.58□□□□□ -1.84
SDC1P18827 SNORA51.12-201ENST00000384448 134 ntBASIC3.58□□□□□ -1.84
SDC1P18827 MIR1183-201ENST00000408856 89 ntBASIC3.58□□□□□ -1.84
SDC1P18827 UBE2V1P9-201ENST00000414760 368 ntBASIC3.58□□□□□ -1.84
SDC1P18827 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.58□□□□□ -1.84
SDC1P18827 AL009174.1-201ENST00000426577 416 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 NDUFB1P1-201ENST00000435191 180 ntBASIC3.58□□□□□ -1.84
SDC1P18827 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.58□□□□□ -1.84
SDC1P18827 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.58□□□□□ -1.84
SDC1P18827 AC114755.5-201ENST00000447760 831 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC006480.1-201ENST00000449887 378 ntBASIC3.58□□□□□ -1.84
SDC1P18827 NANOGP10-201ENST00000453325 895 ntBASIC3.58□□□□□ -1.84
SDC1P18827 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
SDC1P18827 PRDX3P4-201ENST00000470828 747 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.58□□□□□ -1.84
SDC1P18827 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SDC1P18827 AC020593.1-201ENST00000507399 299 ntBASIC3.58□□□□□ -1.84
SDC1P18827 HPRT1P1-201ENST00000509498 657 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC108064.1-201ENST00000513791 460 ntBASIC3.58□□□□□ -1.84
SDC1P18827 RNA5SP164-201ENST00000516533 110 ntBASIC3.58□□□□□ -1.84
SDC1P18827 SCARNA14-201ENST00000516903 136 ntBASIC3.58□□□□□ -1.84
SDC1P18827 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.58□□□□□ -1.84
SDC1P18827 AF279873.1-201ENST00000523393 313 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC008489.1-201ENST00000524271 483 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.58□□□□□ -1.84
SDC1P18827 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.58□□□□□ -1.84
SDC1P18827 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.58□□□□□ -1.84
SDC1P18827 AC006518.2-201ENST00000542513 940 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC007424.1-203ENST00000554613 687 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.58□□□□□ -1.84
SDC1P18827 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SDC1P18827 AL121576.1-201ENST00000556055 276 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC010735.1-201ENST00000567305 1026 ntBASIC3.58□□□□□ -1.84
SDC1P18827 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.58□□□□□ -1.84
SDC1P18827 AC008687.2-201ENST00000597865 520 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 AC018645.2-201ENST00000609151 472 ntBASIC3.58□□□□□ -1.84
SDC1P18827 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 AL512427.1-201ENST00000618593 349 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC022079.2-201ENST00000619739 566 ntBASIC3.58□□□□□ -1.84
SDC1P18827 AC010872.1-201ENST00000624225 675 ntBASIC3.58□□□□□ -1.84
SDC1P18827 BX649567.1-201ENST00000642071 1134 ntBASIC3.58□□□□□ -1.84
SDC1P18827 MTND4P10-201ENST00000446199 1363 ntBASIC3.58□□□□□ -1.84
SDC1P18827 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SDC1P18827 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
SDC1P18827 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
SDC1P18827 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
SDC1P18827 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
SDC1P18827 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 RNU6-1257P-201ENST00000384625 110 ntBASIC3.57□□□□□ -1.84
SDC1P18827 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
SDC1P18827 MCTS2P-201ENST00000394552 546 ntBASIC3.57□□□□□ -1.84
SDC1P18827 SOD2P1-201ENST00000396543 562 ntBASIC3.57□□□□□ -1.84
SDC1P18827 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 ZNF602P-201ENST00000405929 924 ntBASIC3.57□□□□□ -1.84
SDC1P18827 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 AL117339.2-201ENST00000430475 180 ntBASIC3.57□□□□□ -1.84
SDC1P18827 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.57□□□□□ -1.84
SDC1P18827 OR4C10P-201ENST00000434991 931 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.57□□□□□ -1.84
SDC1P18827 RPL23AP15-201ENST00000450202 459 ntBASIC3.57□□□□□ -1.84
SDC1P18827 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.57□□□□□ -1.84
SDC1P18827 AL645939.1-201ENST00000453429 797 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 OR9M1P-201ENST00000459641 921 ntBASIC3.57□□□□□ -1.84
SDC1P18827 S100A11P1-201ENST00000477525 312 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 RPL7L1P13-201ENST00000511702 739 ntBASIC3.57□□□□□ -1.84
SDC1P18827 IGHV3-32-201ENST00000519182 355 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 AC022790.1-201ENST00000522872 204 ntBASIC3.57□□□□□ -1.84
SDC1P18827 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.57□□□□□ -1.84
SDC1P18827 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SDC1P18827 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.57□□□□□ -1.84
SDC1P18827 AL161713.1-201ENST00000555538 145 ntBASIC3.57□□□□□ -1.84
SDC1P18827 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.57□□□□□ -1.84
SDC1P18827 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.57□□□□□ -1.84
SDC1P18827 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.57□□□□□ -1.84
SDC1P18827 AP003476.1-201ENST00000623984 516 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms