Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 DHX40P1-201ENST00000588725 1412 ntBASIC8.29□□□□□ -1.08
TRIM35Q9UPQ4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 TEK-202ENST00000406359 3935 ntTSL 2 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 SNORD62.1-201ENST00000362541 86 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RN7SKP115-201ENST00000363177 317 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-306P-201ENST00000384617 107 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AL136131.1-201ENST00000406079 803 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-121P-201ENST00000410525 99 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 CYP4F30P-202ENST00000420048 405 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 OR4C10P-201ENST00000434991 931 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RPL36AP15-201ENST00000444514 266 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 SNX18P26-201ENST00000458433 740 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RN7SL714P-201ENST00000487050 298 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 RN7SL362P-201ENST00000494228 267 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC096754.1-201ENST00000508904 818 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 KHDC1P1-201ENST00000511053 508 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC106800.3-201ENST00000511389 308 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC097486.1-201ENST00000515331 210 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 SNORA31.18-201ENST00000517043 134 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 MRPS36P4-201ENST00000534436 298 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 SS18L2P2-201ENST00000583960 235 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AL031666.3-201ENST00000609320 1006 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AL356274.1-201ENST00000617064 410 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 CCDC162P-202ENST00000368966 6751 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 AC011504.1-201ENST00000623331 4103 ntBASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC8.28□□□□□ -1.08
TRIM35Q9UPQ4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 AC134882.1-201ENST00000603738 1676 ntBASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 MAK-202ENST00000354489 3941 ntTSL 5 BASIC8.27□□□□□ -1.08
TRIM35Q9UPQ4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC097634.1-201ENST00000604491 2467 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 NPL-212ENST00000614468 2376 ntTSL 5 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 RNU6-1078P-201ENST00000364522 103 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 SNORA62.2-201ENST00000364672 152 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 RNY3P13-201ENST00000365542 102 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL035461.1-201ENST00000421490 332 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 UBE2D3P2-201ENST00000424409 445 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL451136.1-201ENST00000435399 325 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 TIMM9P1-201ENST00000436122 256 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL031584.1-201ENST00000447169 754 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 EEF1B2P3-201ENST00000447718 678 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 RPL21P104-201ENST00000464143 478 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 RN7SL741P-201ENST00000482473 289 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 EIF3KP3-201ENST00000514461 639 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 STX3-204ENST00000530221 534 ntTSL 5 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC233702.7-202ENST00000582941 211 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 CYCSP1-201ENST00000604815 315 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 AL021918.2-201ENST00000613415 194 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 MRE11P1-201ENST00000464884 2127 ntBASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRIM35Q9UPQ4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms