Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC244107.2-201ENST00000611773 76 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC109583.2-201ENST00000617367 129 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC006504.8-201ENST00000621046 635 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC021106.3-201ENST00000623925 531 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL691477.1-201ENST00000624398 162 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 TTK-211ENST00000627129 240 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 AL450345.1-202ENST00000605741 3881 ntBASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.1□□□□□ -1.43
CCDC39Q9UFE4 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 DCAF13P1-201ENST00000495256 1330 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 RNA5SP319-201ENST00000362768 119 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 RPS3AP36-201ENST00000398190 775 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 LINC01347-201ENST00000417964 355 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC093698.1-201ENST00000423843 571 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL356583.2-201ENST00000426536 280 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL358934.1-201ENST00000432346 324 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL591212.2-201ENST00000433923 257 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 CALM1P1-201ENST00000442082 433 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL161636.2-201ENST00000445179 927 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC105399.1-202ENST00000447303 205 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL121877.1-201ENST00000453704 622 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 RN7SL51P-201ENST00000468230 285 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC026782.1-201ENST00000512952 449 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC087276.1-201ENST00000529659 480 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL512310.1-201ENST00000548639 172 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC007342.5-201ENST00000571340 2142 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 MIR1273E-201ENST00000581165 102 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 MIR3171-201ENST00000584270 74 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC136443.5-201ENST00000603741 370 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 SUGT1P3-202ENST00000604259 383 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC015982.1-201ENST00000608113 465 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AC105429.2-201ENST00000610567 517 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 RN7SL787P-201ENST00000613000 284 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 AL603758.1-201ENST00000618654 241 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC39Q9UFE4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC39Q9UFE4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC39Q9UFE4 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC39Q9UFE4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC39Q9UFE4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
CCDC39Q9UFE4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 DCAF13P3-201ENST00000561147 1334 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 UGT2B26P-201ENST00000508672 1613 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RNU1-19P-201ENST00000363306 165 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.145-201ENST00000363527 102 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RNU6-1085P-201ENST00000363576 107 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RNU6-1318P-201ENST00000365389 103 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms