Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AC093267.1-201ENST00000489176 961 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC090543.1-201ENST00000492168 485 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC025459.1-201ENST00000504072 156 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC025260.1-201ENST00000548858 430 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 ZNF192P1-203ENST00000565888 810 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AC112503.1-201ENST00000608436 391 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 MIR6875-201ENST00000617506 72 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 RNA5SP196-201ENST00000625967 102 ntBASIC3.34□□□□□ -1.87
VAPAQ9P0L0 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.34□□□□□ -1.87
VAPAQ9P0L0 PWAR6-201ENST00000552334 4618 ntBASIC3.34□□□□□ -1.88
VAPAQ9P0L0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC005183.1-201ENST00000603687 1979 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 RPL32P3-201ENST00000359025 275 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 DNAJC19P6-201ENST00000401853 280 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 LIPT1P1-201ENST00000415870 1186 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AP000907.1-201ENST00000428428 510 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC021205.2-201ENST00000480069 347 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 VN1R105P-201ENST00000486595 910 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC005351.1-201ENST00000511152 786 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC026402.1-201ENST00000513642 170 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 RNU6-889P-201ENST00000517189 103 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC093331.1-201ENST00000521474 169 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC053481.4-201ENST00000583164 216 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 MIR6864-201ENST00000617935 70 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC010435.1-201ENST00000623353 1177 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 AC112200.1-201ENST00000625015 234 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 ZNF542P-204ENST00000482727 1305 ntBASIC3.33□□□□□ -1.88
VAPAQ9P0L0 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.33□□□□□ -1.88
VAPAQ9P0L0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL807761.1-201ENST00000417622 171 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 MTCO3P4-201ENST00000419236 787 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC006539.3-201ENST00000454258 129 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 RPL6P9-201ENST00000466502 859 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC087312.1-201ENST00000471411 480 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC091917.2-201ENST00000505002 744 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 HPRT1P1-201ENST00000509498 657 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 RNU4-60P-201ENST00000517239 135 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 RANP9-201ENST00000519957 271 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 HMGB1P46-201ENST00000520062 610 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 RN7SL703P-201ENST00000578485 302 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC006338.2-201ENST00000616864 791 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AP003355.3-201ENST00000623465 114 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AC110801.1-201ENST00000623590 212 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 AL513302.2-201ENST00000562313 1842 ntBASIC3.32□□□□□ -1.88
VAPAQ9P0L0 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VAPAQ9P0L0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms