Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 CRYBB2P1-203ENST00000415709 538 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 ELL2P4-201ENST00000446870 1376 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC115115.1-201ENST00000449927 248 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 RPS20P32-201ENST00000456044 356 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 OR5H3P-201ENST00000502817 919 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 SNX5P1-201ENST00000505757 1041 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 RNA5SP217-201ENST00000515959 91 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 ZNF192P1-203ENST00000565888 810 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AC015802.5-201ENST00000607478 399 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 AL589935.2-201ENST00000616471 1231 ntBASIC3.57□□□□□ -1.84
CCDC42Q96M95 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC42Q96M95 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC42Q96M95 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC42Q96M95 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AL592494.2-201ENST00000425455 1548 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC42Q96M95 MIR148B-201ENST00000362252 99 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 RNA5SP167-201ENST00000365461 116 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 MIR320B1-201ENST00000390209 79 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 RNU2-37P-201ENST00000410695 177 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 RPL32P35-201ENST00000415214 394 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 ATP5JP1-201ENST00000431631 322 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 MTCYBP14-201ENST00000457471 715 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 RN7SL385P-201ENST00000468873 276 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC005726.1-201ENST00000494679 427 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 CDH12P2-201ENST00000504393 298 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 RNU6-319P-201ENST00000516025 108 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 RNU1-143P-201ENST00000516296 146 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 SCARNA20.6-201ENST00000517251 106 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 U1.23-201ENST00000610293 146 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 MIR6748-201ENST00000610433 71 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC42Q96M95 RNU1-68P-201ENST00000615382 146 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC139769.3-201ENST00000618383 175 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 U1.39-201ENST00000621562 146 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 AC127502.3-201ENST00000636170 1206 ntBASIC3.56□□□□□ -1.84
CCDC42Q96M95 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC42Q96M95 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC42Q96M95 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC42Q96M95 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC42Q96M95 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC42Q96M95 RNU6-673P-201ENST00000365084 104 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AL359837.1-201ENST00000381357 287 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 SNORD17-201ENST00000390930 237 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC240504.1-201ENST00000395709 845 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 SETP5-201ENST00000437270 562 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 CCRL1P1-201ENST00000449542 1053 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 OR6C72P-201ENST00000451403 892 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 NUTF2P7-201ENST00000453086 375 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC091564.1-201ENST00000464563 479 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 PLGLA-201ENST00000465668 449 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC025518.1-201ENST00000479856 347 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 APOOP4-201ENST00000513530 597 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 RN7SKP13-201ENST00000515933 244 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 IGKV2-26-201ENST00000518305 343 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms