Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC012417.1-201ENST00000582307 1039 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AL592436.1-201ENST00000605135 558 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 HMGN2P28-201ENST00000606102 262 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC005972.3-201ENST00000606304 481 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC097460.3-201ENST00000623099 442 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 AC068620.4-201ENST00000636730 1182 ntBASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.08□□□□□ -1.76
HDDC3Q8N4P3 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC032011.1-201ENST00000611703 1549 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC095050.2-201ENST00000510748 1458 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 ELL2P4-201ENST00000446870 1376 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 RNU6-481P-201ENST00000384194 107 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 RNU6-1151P-201ENST00000384684 107 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 TBCAP1-201ENST00000436520 327 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 NOTCH2P1-201ENST00000443481 624 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 RPS27P23-201ENST00000487608 251 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC023141.12-201ENST00000512399 199 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 MTCO1P30-201ENST00000515244 580 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 RNU7-143P-201ENST00000516781 65 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 IGLV3-26-201ENST00000520756 302 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC090281.1-201ENST00000523019 276 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AP004242.1-201ENST00000533701 349 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC023824.3-201ENST00000569003 562 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AL121772.2-201ENST00000614331 297 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 MIR7702-201ENST00000621931 59 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 MARK2P15-201ENST00000432204 2186 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC068254.2-201ENST00000623938 3577 ntBASIC4.07□□□□□ -1.76
HDDC3Q8N4P3 AC073055.1-201ENST00000456901 1621 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 EIF5P1-201ENST00000400019 1231 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 ZNF603P-201ENST00000405613 487 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 RNU6-77P-201ENST00000410554 91 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 RAB9AP3-201ENST00000412737 573 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL929288.2-201ENST00000446368 407 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 RAB9AP1-201ENST00000449393 573 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 RPS11P1-201ENST00000451072 473 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 CYCSP20-201ENST00000473154 315 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 NCOR1P1-202ENST00000486162 291 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC114878.2-201ENST00000604863 1251 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC012468.1-201ENST00000604888 430 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC007179.3-201ENST00000604976 235 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC018754.1-201ENST00000607486 925 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AL159169.3-201ENST00000608871 561 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 VN1R9P-201ENST00000614184 867 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AP005264.7-201ENST00000625003 745 ntBASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HDDC3Q8N4P3 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HDDC3Q8N4P3 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms