Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLC25A18P1-201ENST00000449385 454 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC010733.1-201ENST00000451515 401 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RPS29P33-201ENST00000456717 146 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RNA5SP269-201ENST00000459032 137 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 MTCYBP17-201ENST00000503579 789 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC004069.2-201ENST00000505438 1114 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RNU2-30P-201ENST00000516209 141 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 CYCSP2-201ENST00000558168 301 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC087477.6-201ENST00000559595 843 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 UBE2FP2-201ENST00000566646 462 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AGGF1P4-201ENST00000568249 801 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 MIR4330-201ENST00000579077 105 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 SNORD39.3-201ENST00000584451 71 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC007497.1-201ENST00000610421 561 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL161616.1-201ENST00000611867 286 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC025594.3-201ENST00000613068 790 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC008121.2-201ENST00000614647 523 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 uc_338.18-201ENST00000615451 175 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AL590240.3-201ENST00000621416 943 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 AC231657.1-201ENST00000624313 397 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 CR381572.2-201ENST00000624852 397 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 ZNF652P1-201ENST00000442420 1309 ntBASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
PTCHD3Q3KNS1 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 DSTNP4-201ENST00000399472 474 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 MIR1271-201ENST00000408537 86 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 Y_RNA.599-201ENST00000410489 109 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RN7SKP142-201ENST00000411236 328 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL663109.1-201ENST00000411498 844 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 MTCO2P34-201ENST00000421994 607 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RPS3AP44-201ENST00000425466 790 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 BMS1P19-201ENST00000433925 393 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RPS17P8-201ENST00000434525 335 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RPS24P1-201ENST00000438550 371 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC092427.1-201ENST00000439177 601 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC092641.1-201ENST00000440229 772 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 CEACAMP9-201ENST00000442990 513 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RPL7L1P1-201ENST00000448259 785 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 MTCO3P2-201ENST00000457365 171 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 ARPC3P2-201ENST00000457786 533 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC020890.1-201ENST00000491837 504 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC006499.2-201ENST00000513470 337 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 HIGD1AP5-201ENST00000529959 259 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC074029.1-201ENST00000552531 1044 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 EIF5A2P1-201ENST00000564027 460 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC012414.6-201ENST00000568241 401 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC007599.1-201ENST00000568688 1174 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL52P-201ENST00000584271 284 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL435P-201ENST00000584418 282 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 NF1P5-201ENST00000588287 448 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AL391497.1-201ENST00000608671 547 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 AC243773.3-201ENST00000613270 256 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL722P-201ENST00000617780 284 ntBASIC4.68□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL565P-201ENST00000618246 284 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms