Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC097262.1-201ENST00000452559 548 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC092754.2-201ENST00000463506 460 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 RN7SL222P-201ENST00000476452 299 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 RN7SL97P-201ENST00000486780 299 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 RN7SL30P-201ENST00000488416 306 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 KCTD9P2-201ENST00000512203 1013 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 OR5M2P-201ENST00000529003 936 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC063949.1-201ENST00000552900 865 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC093519.1-201ENST00000566109 298 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXA1P49639 AP001981.2-201ENST00000603241 418 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AC006270.3-201ENST00000605967 1036 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AC135507.1-201ENST00000607214 561 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AL512329.2-201ENST00000607350 548 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXA1P49639 CR381670.1-201ENST00000624291 1693 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 AL592437.2-201ENST00000421655 2434 ntBASIC3.86□□□□□ -1.79
HOXA1P49639 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXA1P49639 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXA1P49639 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXA1P49639 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 SNURFL-201ENST00000309296 343 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RNA5SP391-201ENST00000363456 119 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RNU6-115P-201ENST00000364310 107 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 MIR223-201ENST00000385204 110 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 Z98941.1-201ENST00000407764 100 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AL450338.1-201ENST00000407987 512 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RN7SKP56-201ENST00000410513 331 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 AL159169.1-201ENST00000421119 127 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RPL31P54-201ENST00000429803 370 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RPL36P19-201ENST00000430744 301 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 RPS17P8-201ENST00000434525 335 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 EEF1B2P5-201ENST00000444820 548 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 AP000936.2-201ENST00000447151 681 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 HMGB3P22-202ENST00000451823 572 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 SNRPGP5-201ENST00000456003 220 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 TPTE2P5-203ENST00000458118 728 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 RPS18P6-201ENST00000476880 458 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 MTCYBP17-201ENST00000503579 789 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC005178.1-201ENST00000508392 440 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXA1P49639 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 OR5M7P-201ENST00000526140 972 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXA1P49639 CYP4A43P-201ENST00000568156 121 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 MIR3176-201ENST00000582210 90 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC017100.2-201ENST00000584628 355 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXA1P49639 WISP1-OT1-201ENST00000602893 642 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 SUMO2P15-201ENST00000604285 278 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXA1P49639 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXA1P49639 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.85□□□□□ -1.79
HOXA1P49639 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXA1P49639 AC021755.1-201ENST00000559747 1447 ntBASIC3.85□□□□□ -1.79
HOXA1P49639 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXA1P49639 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA1P49639 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA1P49639 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA1P49639 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms