Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
TNFRSF4P43489 AC138393.1-206ENST00000540997 1886 ntBASIC3.92□□□□□ -1.78
TNFRSF4P43489 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 IL6STP1-201ENST00000346911 1020 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL355615.1-201ENST00000406187 641 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 SNORA11.1-201ENST00000408133 129 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 TCEA1P2-201ENST00000420496 906 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 FO393414.1-201ENST00000428697 1184 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 ELOCP6-201ENST00000429066 328 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 ZNF33CP-201ENST00000432492 2030 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC092447.2-201ENST00000435487 669 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 HMGB1P45-201ENST00000435986 653 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 HLA-N-201ENST00000437516 135 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 ELOCP12-201ENST00000458706 328 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 PPBPP1-201ENST00000510807 373 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AF279873.1-201ENST00000523393 313 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC019227.1-201ENST00000526902 510 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL121834.1-201ENST00000572284 509 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AP001180.3-201ENST00000582221 145 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 DNAJC19P3-201ENST00000594491 331 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC084757.4-201ENST00000616350 526 ntBASIC3.91□□□□□ -1.78
TNFRSF4P43489 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TNFRSF4P43489 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
TNFRSF4P43489 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TNFRSF4P43489 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
TNFRSF4P43489 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
TNFRSF4P43489 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
TNFRSF4P43489 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.9□□□□□ -1.78
TNFRSF4P43489 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
TNFRSF4P43489 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TNFRSF4P43489 RNA5SP387-201ENST00000364226 106 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 RNU6-207P-201ENST00000384137 107 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 RPS12P23-201ENST00000419579 400 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 Z74696.2-201ENST00000436514 498 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 OR51B8P-201ENST00000449892 769 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 CDC42P1-201ENST00000456658 548 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 snoU13.7-201ENST00000459220 104 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 RPL7P49-201ENST00000471402 708 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC104072.1-201ENST00000568817 668 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC017100.2-201ENST00000584628 355 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 MIR7154-201ENST00000620673 73 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AC067852.7-201ENST00000623270 535 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL773545.4-201ENST00000637262 310 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 AL513478.4-201ENST00000641636 310 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 215.2 ms