Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC005183.1-201ENST00000603687 1979 ntBASIC5.19□□□□□ -1.58
CUX1P39880 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC5.19□□□□□ -1.58
CUX1P39880 U3.12-201ENST00000364498 214 ntBASIC5.19□□□□□ -1.58
CUX1P39880 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.19□□□□□ -1.58
CUX1P39880 Z99127.3-201ENST00000448158 395 ntBASIC5.19□□□□□ -1.58
CUX1P39880 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.19□□□□□ -1.58
CUX1P39880 HMGN2P7-201ENST00000456186 273 ntBASIC5.19□□□□□ -1.58
CUX1P39880 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.19□□□□□ -1.58
CUX1P39880 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.19□□□□□ -1.58
CUX1P39880 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.19□□□□□ -1.58
CUX1P39880 CYCSP39-201ENST00000565821 309 ntBASIC5.19□□□□□ -1.58
CUX1P39880 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.19□□□□□ -1.58
CUX1P39880 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC5.19□□□□□ -1.58
CUX1P39880 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC5.19□□□□□ -1.58
CUX1P39880 MTND4P26-201ENST00000415971 1359 ntBASIC5.19□□□□□ -1.58
CUX1P39880 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CUX1P39880 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CUX1P39880 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC5.18□□□□□ -1.58
CUX1P39880 AP000942.1-201ENST00000463969 747 ntBASIC5.18□□□□□ -1.58
CUX1P39880 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.18□□□□□ -1.58
CUX1P39880 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.18□□□□□ -1.58
CUX1P39880 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 AL359693.1-201ENST00000614959 2407 ntBASIC5.18□□□□□ -1.58
CUX1P39880 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
CUX1P39880 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
CUX1P39880 AL136360.1-201ENST00000503377 1900 ntBASIC5.18□□□□□ -1.58
CUX1P39880 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC5.18□□□□□ -1.58
CUX1P39880 ZNF826P-207ENST00000622273 1910 ntBASIC5.18□□□□□ -1.58
CUX1P39880 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.18□□□□□ -1.58
CUX1P39880 RNU6-316P-201ENST00000391027 107 ntBASIC5.18□□□□□ -1.58
CUX1P39880 AL353692.2-201ENST00000407054 335 ntBASIC5.18□□□□□ -1.58
CUX1P39880 RPL7P59-201ENST00000447700 943 ntBASIC5.18□□□□□ -1.58
CUX1P39880 RN7SL432P-201ENST00000484057 298 ntBASIC5.18□□□□□ -1.58
CUX1P39880 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.18□□□□□ -1.58
CUX1P39880 AL512310.1-201ENST00000548639 172 ntBASIC5.18□□□□□ -1.58
CUX1P39880 AC079600.2-201ENST00000550076 130 ntBASIC5.18□□□□□ -1.58
CUX1P39880 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.18□□□□□ -1.58
CUX1P39880 NRBF2P5-201ENST00000603087 788 ntBASIC5.18□□□□□ -1.58
CUX1P39880 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC5.18□□□□□ -1.58
CUX1P39880 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CUX1P39880 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 USP33-201ENST00000357428 4155 ntTSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 RPS24P13-201ENST00000442520 397 ntBASIC5.17□□□□□ -1.58
CUX1P39880 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 HMGB1P3-201ENST00000502802 616 ntBASIC5.17□□□□□ -1.58
CUX1P39880 snoU109.6-201ENST00000516831 118 ntBASIC5.17□□□□□ -1.58
CUX1P39880 AL139174.1-201ENST00000531489 886 ntBASIC5.17□□□□□ -1.58
CUX1P39880 AC018552.3-201ENST00000567416 561 ntBASIC5.17□□□□□ -1.58
CUX1P39880 BDH2P1-201ENST00000602288 736 ntBASIC5.17□□□□□ -1.58
CUX1P39880 AC104763.2-201ENST00000604179 382 ntBASIC5.17□□□□□ -1.58
CUX1P39880 AC068722.2-201ENST00000618734 544 ntBASIC5.17□□□□□ -1.58
CUX1P39880 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.17□□□□□ -1.58
CUX1P39880 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.17□□□□□ -1.58
CUX1P39880 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CUX1P39880 AC000403.1-201ENST00000613696 3585 ntBASIC5.16□□□□□ -1.58
CUX1P39880 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CUX1P39880 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.16□□□□□ -1.58
CUX1P39880 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CUX1P39880 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
CUX1P39880 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
CUX1P39880 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.16□□□□□ -1.58
CUX1P39880 MTCO1P8-201ENST00000416914 1523 ntBASIC5.16□□□□□ -1.58
CUX1P39880 RNU4-82P-201ENST00000362443 140 ntBASIC5.16□□□□□ -1.58
CUX1P39880 ZNF603P-201ENST00000405613 487 ntBASIC5.16□□□□□ -1.58
CUX1P39880 RNA5SP184-201ENST00000411071 108 ntBASIC5.16□□□□□ -1.58
CUX1P39880 AC108734.1-201ENST00000439549 399 ntBASIC5.16□□□□□ -1.58
CUX1P39880 AC112653.1-201ENST00000443851 386 ntBASIC5.16□□□□□ -1.58
CUX1P39880 MRPS31P2-201ENST00000451581 518 ntBASIC5.16□□□□□ -1.58
CUX1P39880 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC5.16□□□□□ -1.58
CUX1P39880 RNA5SP367-201ENST00000516557 118 ntBASIC5.16□□□□□ -1.58
CUX1P39880 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.16□□□□□ -1.58
CUX1P39880 HMGB1P6-201ENST00000569046 646 ntBASIC5.16□□□□□ -1.58
CUX1P39880 AL034351.1-201ENST00000605288 668 ntBASIC5.16□□□□□ -1.58
CUX1P39880 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.16□□□□□ -1.58
CUX1P39880 CYCSP41-201ENST00000616920 296 ntBASIC5.16□□□□□ -1.58
CUX1P39880 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.16□□□□□ -1.58
CUX1P39880 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CUX1P39880 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CUX1P39880 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
CUX1P39880 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.15□□□□□ -1.58
CUX1P39880 MIR22-201ENST00000362190 85 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AL031679.1-201ENST00000400616 525 ntBASIC5.15□□□□□ -1.58
CUX1P39880 CST9LP2-201ENST00000437612 320 ntBASIC5.15□□□□□ -1.58
CUX1P39880 NPM1P13-201ENST00000452663 865 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AC012123.2-201ENST00000485809 248 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC5.15□□□□□ -1.58
CUX1P39880 NARSP2-201ENST00000518524 679 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.15□□□□□ -1.58
CUX1P39880 AL049844.2-201ENST00000604280 628 ntBASIC5.15□□□□□ -1.58
CUX1P39880 BNIP3P10-201ENST00000605360 577 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AL096803.3-201ENST00000609032 532 ntBASIC5.15□□□□□ -1.58
CUX1P39880 AC244205.2-202ENST00000635781 342 ntBASIC5.15□□□□□ -1.58
CUX1P39880 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms