Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HOXD3P31249 OR4A15-201ENST00000314706 1035 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 Y_RNA.6-201ENST00000362350 114 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RN7SKP113-201ENST00000363891 295 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RNU1-85P-201ENST00000364127 164 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RNU6-297P-201ENST00000384636 107 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RPS24P12-201ENST00000402084 394 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 MTND1P23-201ENST00000416931 372 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC008280.1-201ENST00000418851 412 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXD3P31249 OR2AM1P-201ENST00000422137 422 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AL389915.1-201ENST00000422463 466 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 AL022238.1-201ENST00000442557 355 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RPL21P133-201ENST00000443666 476 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 VN1R10P-201ENST00000447106 875 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC097493.1-201ENST00000463958 372 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC091564.1-201ENST00000464563 479 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC097484.1-201ENST00000471148 389 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 MTND6P6-201ENST00000478031 263 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 EEF1A1P25-201ENST00000495704 1267 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RPSAP51-201ENST00000497462 645 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 BNIP3P41-201ENST00000503774 571 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 PGBD4P4-201ENST00000509673 613 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 OR5G4P-201ENST00000525251 760 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 CYCSP28-201ENST00000534284 321 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 BNIP3P1-201ENST00000547295 580 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC087883.1-201ENST00000551882 391 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC009063.1-201ENST00000563342 702 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC019322.1-201ENST00000571869 389 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 LARP7P2-201ENST00000575306 125 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC005771.1-201ENST00000585581 349 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC083760.1-201ENST00000589621 670 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXD3P31249 AP000403.1-201ENST00000603349 851 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AL031320.1-201ENST00000604177 357 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AL589743.7-201ENST00000612637 233 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC009704.2-201ENST00000618739 483 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 PHACTR2P1-201ENST00000605639 1414 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 EEF1A1P36-201ENST00000427807 1351 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXD3P31249 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 RNA5SP187-201ENST00000384400 119 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 DSTNP4-201ENST00000399472 474 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC025750.1-201ENST00000399891 379 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 RN7SKP114-201ENST00000410327 279 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 FAR2P2-201ENST00000413041 594 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 FAR2P4-202ENST00000425399 584 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.94□□□□□ -1.78
HOXD3P31249 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.94□□□□□ -1.78
HOXD3P31249 PRPF38AP2-201ENST00000438179 851 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 MTATP6P13-201ENST00000438531 667 ntBASIC3.94□□□□□ -1.78
HOXD3P31249 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC3.94□□□□□ -1.78
HOXD3P31249 MTCO1P48-201ENST00000448024 1096 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms