Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 HMGB3P26-201ENST00000560051 582 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 GTF2IP8-201ENST00000560687 584 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AP005119.2-201ENST00000579735 1105 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.56□□□□□ -1.52
COL6A1P12109 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL6A1P12109 AC025857.2-201ENST00000602711 238 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 AC108738.1-201ENST00000603703 237 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 IMMP1LP1-201ENST00000605170 488 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.56□□□□□ -1.52
COL6A1P12109 AC104985.2-201ENST00000620598 500 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.56□□□□□ -1.52
COL6A1P12109 ATE1-AS1-202ENST00000636460 506 ntBASIC5.56□□□□□ -1.52
COL6A1P12109 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL6A1P12109 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL6A1P12109 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL6A1P12109 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL6A1P12109 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 ELF2P3-201ENST00000445099 1506 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 RNU5F-7P-201ENST00000363696 115 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 SNORD113.2-201ENST00000364166 89 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 Y_RNA.302-201ENST00000364997 102 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 CYCSP45-201ENST00000402289 315 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 RN7SKP56-201ENST00000410513 331 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 RPL21P32-201ENST00000419877 477 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 GAPDHP49-201ENST00000421421 961 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 USP9YP18-201ENST00000425912 695 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 MTND3P23-201ENST00000431980 347 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 PPIAP17-201ENST00000438507 471 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 AL034418.1-201ENST00000448675 860 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL935212.3-201ENST00000450729 284 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 RPL23AP56-201ENST00000460778 453 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 RPS4XP15-201ENST00000489210 795 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A1P12109 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.55□□□□□ -1.52
COL6A1P12109 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 KPNA2P3-201ENST00000584190 848 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 AL356055.1-201ENST00000602528 446 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AC011626.1-201ENST00000604710 562 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 MIR6716-201ENST00000613413 80 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL357080.1-201ENST00000617394 239 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 CR381572.2-201ENST00000624852 397 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL6A1P12109 OR5H6-203ENST00000642105 978 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 Z95327.2-201ENST00000414579 1873 ntBASIC5.55□□□□□ -1.52
COL6A1P12109 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A1P12109 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
COL6A1P12109 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A1P12109 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL6A1P12109 CR383658.2-201ENST00000547576 1525 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 TEX21P-201ENST00000447107 1476 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
COL6A1P12109 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A1P12109 RNA5SP447-201ENST00000363749 119 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 RNU6-660P-201ENST00000364566 109 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A1P12109 RNU6-761P-201ENST00000384148 107 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 RNU6-348P-201ENST00000384386 107 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A1P12109 SNORA11C-201ENST00000408532 129 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 SNORA77-201ENST00000408716 125 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 UBTFL3-201ENST00000418934 1024 ntBASIC5.54□□□□□ -1.52
COL6A1P12109 Z97055.1-201ENST00000419730 712 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms