Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD4P09016 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 OR5AK3P-201ENST00000527486 1297 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD4P09016 HNRNPCP4-201ENST00000571636 900 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 MIR4512-201ENST00000583257 77 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD4P09016 VN1R87P-201ENST00000596706 487 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AC073387.2-201ENST00000604797 784 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL354984.3-201ENST00000604803 325 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL034351.1-201ENST00000605288 668 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL451086.1-201ENST00000605596 223 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 RNU4-5P-201ENST00000607255 135 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 MIR6875-201ENST00000617506 72 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AC073569.3-201ENST00000619055 682 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 AL445363.3-201ENST00000623080 671 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AC006963.1-201ENST00000624003 1052 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXD4P09016 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 RPS4XP5-202ENST00000449995 1334 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.76□□□□□ -1.81
HOXD4P09016 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXD4P09016 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 TNPO1P3-201ENST00000436471 2662 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 AC007685.1-201ENST00000329806 452 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 SNORA60-201ENST00000362396 134 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 RNA5SP27-201ENST00000363839 119 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 RNA5SP130-201ENST00000364431 114 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXD4P09016 RNU6-932P-201ENST00000391108 106 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL590290.1-201ENST00000405336 380 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 HMGB3P18-201ENST00000406327 590 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 CYCSP19-201ENST00000411715 316 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC092638.1-201ENST00000411966 1275 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 AL161631.1-201ENST00000417933 486 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD4P09016 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 MTND2P5-201ENST00000432656 1006 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 AL358232.1-201ENST00000448030 501 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC098826.2-201ENST00000452011 651 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 HMGB3P21-201ENST00000452483 547 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL645939.1-201ENST00000453429 797 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD4P09016 AC006511.1-201ENST00000470614 315 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD4P09016 RPS29P19-201ENST00000479709 171 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 BNIP3P41-201ENST00000503774 571 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC020699.1-201ENST00000505161 445 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXD4P09016 AC093752.1-206ENST00000511823 336 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 NPM1P41-201ENST00000512920 831 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXD4P09016 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXD4P09016 EEF1A1P37-201ENST00000522748 715 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXD4P09016 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXD4P09016 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXD4P09016 ZNF92P3-201ENST00000596594 954 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AP002906.1-201ENST00000603405 233 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 Z82195.1-201ENST00000604558 398 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL160290.3-201ENST00000604869 165 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL450336.1-201ENST00000605180 586 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL365400.2-201ENST00000605604 902 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AC087683.2-201ENST00000611384 326 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 AL391261.4-201ENST00000616012 481 ntBASIC3.76□□□□□ -1.81
HOXD4P09016 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms