Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM39Q9HCM9 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC100757.1-201ENST00000616872 1835 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RNU6-28P-201ENST00000362378 107 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RN7SKP145-201ENST00000363291 303 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 Y_RNA.296-201ENST00000364930 108 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RNU6-744P-201ENST00000365557 107 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SNORA70.6-201ENST00000383934 134 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RNU6-1316P-201ENST00000384242 108 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SNORA67-201ENST00000384423 137 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 OR4K12P-201ENST00000406538 961 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SPA17P1-201ENST00000416656 452 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AL590609.2-201ENST00000421430 368 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 HMGB1P15-201ENST00000453854 435 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RPS20P21-201ENST00000466859 343 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RPS4XP1-201ENST00000482189 787 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC093267.1-201ENST00000489176 961 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 TXNP6-201ENST00000510190 310 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 RNU6-430P-201ENST00000517078 107 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC022790.1-201ENST00000522872 204 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AHI1-217ENST00000534469 680 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC092470.1-201ENST00000546187 132 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC068993.1-201ENST00000546724 589 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CCNG2P1-201ENST00000549521 1000 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 TPRKBP2-201ENST00000565969 475 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 MIR4660-201ENST00000583549 74 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 NRBF2P1-201ENST00000587407 859 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC090970.3-201ENST00000612566 866 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC009237.17-201ENST00000618111 748 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CR381653.2-201ENST00000624041 768 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 AL353796.1-201ENST00000561542 3241 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 Z95327.2-201ENST00000414579 1873 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SAGE4P-201ENST00000442271 3381 ntBASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
TRIM39Q9HCM9 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 SMG1P4-204ENST00000523028 4131 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 FCF1P10-201ENST00000407590 479 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 RNU2-21P-201ENST00000410368 188 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 RPS15AP40-201ENST00000419621 391 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC012065.2-201ENST00000421295 375 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL139415.2-201ENST00000431968 163 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 UBE2V1P8-201ENST00000437166 265 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 PGBD4P3-201ENST00000440731 581 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 MTND6P13-201ENST00000443510 523 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 AL163193.1-201ENST00000444895 788 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 ABCC13-202ENST00000463099 3842 ntBASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRIM39Q9HCM9 RN7SL177P-201ENST00000476596 299 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms