Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.56□□□□□ -2
FOXA3P55318 AC005951.1-201ENST00000576706 485 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.56□□□□□ -2
FOXA3P55318 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 AL606490.9-201ENST00000603331 271 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.56□□□□□ -2
FOXA3P55318 RMST_5.1-201ENST00000618704 126 ntBASIC2.56□□□□□ -2
FOXA3P55318 AC069209.1-201ENST00000619282 651 ntBASIC2.56□□□□□ -2
FOXA3P55318 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.56□□□□□ -2
FOXA3P55318 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.56□□□□□ -2
FOXA3P55318 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA3P55318 AL136164.4-201ENST00000625013 2135 ntBASIC2.56□□□□□ -2
FOXA3P55318 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.56□□□□□ -2
FOXA3P55318 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
FOXA3P55318 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 RSL24D1P1-201ENST00000404972 493 ntBASIC2.55□□□□□ -2
FOXA3P55318 AL445189.1-201ENST00000405722 338 ntBASIC2.55□□□□□ -2
FOXA3P55318 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 RPL7P46-201ENST00000425129 740 ntBASIC2.55□□□□□ -2
FOXA3P55318 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 OR4F13P-201ENST00000428478 931 ntBASIC2.55□□□□□ -2
FOXA3P55318 RPL23AP69-201ENST00000431134 458 ntBASIC2.55□□□□□ -2
FOXA3P55318 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
FOXA3P55318 AC007563.3-201ENST00000433233 371 ntBASIC2.55□□□□□ -2
FOXA3P55318 AL590103.1-201ENST00000434488 307 ntBASIC2.55□□□□□ -2
FOXA3P55318 HMGB1P45-201ENST00000435986 653 ntBASIC2.55□□□□□ -2
FOXA3P55318 AC006994.1-201ENST00000438212 839 ntBASIC2.55□□□□□ -2
FOXA3P55318 MTND5P3-201ENST00000438536 1800 ntBASIC2.55□□□□□ -2
FOXA3P55318 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 HSPE1P28-201ENST00000443139 211 ntBASIC2.55□□□□□ -2
FOXA3P55318 VN1R48P-201ENST00000448149 1036 ntBASIC2.55□□□□□ -2
FOXA3P55318 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 AC091564.1-201ENST00000464563 479 ntBASIC2.55□□□□□ -2
FOXA3P55318 AC146507.1-201ENST00000468335 354 ntBASIC2.55□□□□□ -2
FOXA3P55318 RN7SL459P-201ENST00000481078 302 ntBASIC2.55□□□□□ -2
FOXA3P55318 RN7SL283P-201ENST00000489055 303 ntBASIC2.55□□□□□ -2
FOXA3P55318 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC2.55□□□□□ -2
FOXA3P55318 RNA5SP217-201ENST00000515959 91 ntBASIC2.55□□□□□ -2
FOXA3P55318 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 PTS-202ENST00000524931 696 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.55□□□□□ -2
FOXA3P55318 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.55□□□□□ -2
FOXA3P55318 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC2.55□□□□□ -2
FOXA3P55318 FAM35CP-201ENST00000554755 2470 ntBASIC2.55□□□□□ -2
FOXA3P55318 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 MTND4P34-201ENST00000572715 1371 ntBASIC2.55□□□□□ -2
FOXA3P55318 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC2.55□□□□□ -2
FOXA3P55318 AC068790.4-201ENST00000602474 263 ntBASIC2.55□□□□□ -2
FOXA3P55318 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.55□□□□□ -2
FOXA3P55318 AL391834.1-201ENST00000609609 560 ntBASIC2.55□□□□□ -2
FOXA3P55318 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 AC112484.5-201ENST00000624189 228 ntBASIC2.55□□□□□ -2
FOXA3P55318 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC2.55□□□□□ -2
FOXA3P55318 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 AC119674.1-212ENST00000641155 993 ntBASIC2.55□□□□□ -2
FOXA3P55318 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA3P55318 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.54□□□□□ -2
FOXA3P55318 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.54□□□□□ -2
FOXA3P55318 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
FOXA3P55318 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.54□□□□□ -2
FOXA3P55318 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 FRG1CP-201ENST00000358464 769 ntBASIC2.54□□□□□ -2
FOXA3P55318 U3.6-201ENST00000363622 211 ntBASIC2.54□□□□□ -2
FOXA3P55318 DYNLT3P1-201ENST00000378574 347 ntBASIC2.54□□□□□ -2
FOXA3P55318 RNU6-532P-201ENST00000384318 107 ntBASIC2.54□□□□□ -2
FOXA3P55318 ST13P16-201ENST00000401760 781 ntBASIC2.54□□□□□ -2
FOXA3P55318 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
FOXA3P55318 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 AC004987.3-201ENST00000413879 771 ntBASIC2.54□□□□□ -2
FOXA3P55318 RPL32P35-201ENST00000415214 394 ntBASIC2.54□□□□□ -2
FOXA3P55318 NDUFB4P5-201ENST00000415445 361 ntBASIC2.54□□□□□ -2
FOXA3P55318 EI24P1-201ENST00000416584 867 ntBASIC2.54□□□□□ -2
FOXA3P55318 MTND4P11-201ENST00000417020 1058 ntBASIC2.54□□□□□ -2
FOXA3P55318 MTND2P15-201ENST00000418575 892 ntBASIC2.54□□□□□ -2
FOXA3P55318 MTCYBP29-201ENST00000436327 1006 ntBASIC2.54□□□□□ -2
FOXA3P55318 Z99127.3-201ENST00000448158 395 ntBASIC2.54□□□□□ -2
FOXA3P55318 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 CYCSP42-201ENST00000450823 238 ntBASIC2.54□□□□□ -2
FOXA3P55318 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC2.54□□□□□ -2
FOXA3P55318 AC104308.1-201ENST00000454621 333 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms