Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.95□□□□□ -1.3
COL9A1P20849 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC6.95□□□□□ -1.3
COL9A1P20849 AC007068.2-201ENST00000543168 395 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 AC126177.3-201ENST00000551839 688 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.95□□□□□ -1.3
COL9A1P20849 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC6.95□□□□□ -1.3
COL9A1P20849 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.95□□□□□ -1.3
COL9A1P20849 AL035410.2-201ENST00000604963 864 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 AL352984.2-202ENST00000613699 155 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL9A1P20849 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 OR52B5P-204ENST00000641744 3467 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 AL353807.3-201ENST00000500626 2505 ntBASIC6.95□□□□□ -1.3
COL9A1P20849 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.95□□□□□ -1.3
COL9A1P20849 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL9A1P20849 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL9A1P20849 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.94□□□□□ -1.3
COL9A1P20849 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC6.94□□□□□ -1.3
COL9A1P20849 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
COL9A1P20849 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
COL9A1P20849 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 OR52B3P-201ENST00000314715 928 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 Y_RNA.151-201ENST00000363566 112 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 RNU6-715P-201ENST00000365204 103 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 MIR628-201ENST00000385229 95 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 HMGB3P7-201ENST00000400214 611 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AL133270.1-201ENST00000402635 279 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AC017078.1-201ENST00000416146 368 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.94□□□□□ -1.3
COL9A1P20849 AC005094.1-201ENST00000440420 368 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AC083806.1-201ENST00000468934 316 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AP001086.1-201ENST00000494882 321 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.94□□□□□ -1.3
COL9A1P20849 AC140063.1-201ENST00000541343 259 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.94□□□□□ -1.3
COL9A1P20849 RPL21P7-201ENST00000557463 483 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC6.94□□□□□ -1.3
COL9A1P20849 MIR4697-201ENST00000582977 78 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 AC092266.1-201ENST00000610958 165 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 Mico1.1-201ENST00000611698 204 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC6.94□□□□□ -1.3
COL9A1P20849 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 AC009120.2-204ENST00000621548 2032 ntBASIC6.94□□□□□ -1.3
COL9A1P20849 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.94□□□□□ -1.3
COL9A1P20849 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC6.94□□□□□ -1.3
COL9A1P20849 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL9A1P20849 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.93□□□□□ -1.3
COL9A1P20849 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL9A1P20849 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL9A1P20849 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC6.93□□□□□ -1.3
COL9A1P20849 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL9A1P20849 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.93□□□□□ -1.3
COL9A1P20849 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL9A1P20849 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL9A1P20849 RNU1-76P-201ENST00000362903 159 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
COL9A1P20849 RNU6-735P-201ENST00000410612 107 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC6.93□□□□□ -1.3
COL9A1P20849 COX6CP10-201ENST00000416832 224 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.93□□□□□ -1.3
COL9A1P20849 EIF4EP2-201ENST00000422816 654 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.93□□□□□ -1.3
COL9A1P20849 AC022022.1-201ENST00000430304 178 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 RPL36P19-201ENST00000430744 301 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 KRTAP3-4P-201ENST00000430780 280 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC6.93□□□□□ -1.3
COL9A1P20849 RPL7L1P11-201ENST00000446092 721 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 RPL23AP28-201ENST00000448062 470 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 RN7SL216P-201ENST00000471607 298 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AP000926.1-201ENST00000479573 241 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 RN7SL432P-201ENST00000484057 298 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 UBA52P7-201ENST00000486088 380 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.93□□□□□ -1.3
COL9A1P20849 RNU7-200P-201ENST00000516105 62 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AP000648.1-201ENST00000529682 397 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 MRPS36P4-201ENST00000534436 298 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC6.93□□□□□ -1.3
COL9A1P20849 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.93□□□□□ -1.3
COL9A1P20849 MIR3135A-201ENST00000578460 77 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 MIR4293-201ENST00000584305 78 ntBASIC6.93□□□□□ -1.3
COL9A1P20849 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC6.93□□□□□ -1.3
COL9A1P20849 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC6.93□□□□□ -1.3
COL9A1P20849 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms