Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC126755.2-208ENST00000327792 462 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC138969.1-213ENST00000331436 462 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 RNU6-492P-201ENST00000363035 104 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 RNA5SP428-201ENST00000365129 132 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC069213.2-201ENST00000420238 366 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC233981.1-201ENST00000423224 461 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL035407.1-201ENST00000429211 571 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 RPL31P54-201ENST00000429803 370 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 NMNAT1P2-201ENST00000435192 860 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC241584.1-201ENST00000438469 1241 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC092013.1-201ENST00000438795 332 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL137845.2-201ENST00000444292 988 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 MRPL48P1-201ENST00000445390 636 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 TAF9P1-201ENST00000445421 515 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC239367.2-201ENST00000447309 705 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 PTMAP3-201ENST00000447474 330 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 EIF4A1P11-201ENST00000451239 222 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL445669.2-201ENST00000454425 421 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 TAF9P2-201ENST00000454958 515 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 KRT19P6-201ENST00000510983 209 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC027309.2-201ENST00000520566 192 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC093519.1-201ENST00000566109 298 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 PSMA6P4-201ENST00000603247 718 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC064872.1-201ENST00000604823 1072 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC131238.1-201ENST00000617135 328 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC098679.4-201ENST00000624241 654 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 CR381670.1-201ENST00000624291 1693 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC087190.4-201ENST00000574616 8334 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 AC009229.4-201ENST00000623854 1947 ntBASIC4.66□□□□□ -1.66
VPS4AQ9UN37 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS4AQ9UN37 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS4AQ9UN37 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS4AQ9UN37 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS4AQ9UN37 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.65□□□□□ -1.66
VPS4AQ9UN37 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS4AQ9UN37 AL390862.1-201ENST00000635467 1469 ntBASIC4.65□□□□□ -1.66
VPS4AQ9UN37 OR10J6P-201ENST00000289731 930 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 RNU6-623P-201ENST00000363143 105 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 MIR92A2-201ENST00000385299 75 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AP000580.1-201ENST00000404439 358 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 TPT1P2-201ENST00000413105 503 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC092634.6-201ENST00000418558 192 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 EIF4HP2-201ENST00000424380 563 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 RPS25P9-201ENST00000435591 252 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC129850.1-201ENST00000436203 508 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 DDX39BP2-208ENST00000453923 258 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC112206.1-201ENST00000468416 477 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 RPS6P4-201ENST00000494693 758 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC025674.1-201ENST00000507074 324 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 SLC25A15P5-201ENST00000508033 253 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LTV1P1-201ENST00000510683 1237 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 RNU6-678P-201ENST00000516832 109 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 RN7SKP92-201ENST00000517266 244 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 OR5AK1P-201ENST00000524837 922 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC138915.2-201ENST00000569776 97 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 TVP23CP2-201ENST00000571473 623 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC103987.3-201ENST00000582071 292 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 AC008687.2-201ENST00000597865 520 ntBASIC4.65□□□□□ -1.67
VPS4AQ9UN37 WISP1-OT1-201ENST00000602893 642 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms