Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AP000756.2-201ENST00000624168 2567 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RNU6-984P-201ENST00000363236 109 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RNU6-501P-201ENST00000364072 100 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RNU6-1119P-201ENST00000384349 108 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 U3.30-201ENST00000391308 210 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 SNRPEP2-201ENST00000397592 279 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 DSTNP4-201ENST00000399472 474 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AF274854.1-201ENST00000413236 615 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL365184.2-201ENST00000431139 435 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC016831.4-201ENST00000438302 307 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 BMI1P1-201ENST00000445879 941 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 EEF1E1P1-201ENST00000446998 430 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CFTRP1-201ENST00000456646 183 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RPL7AP10-201ENST00000481016 791 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 SCARNA22-201ENST00000503991 125 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 NPM1P6-201ENST00000521088 871 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC022726.1-201ENST00000587475 207 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC087683.1-201ENST00000591187 441 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC079089.3-201ENST00000603094 673 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC104687.2-201ENST00000604442 342 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL021997.1-201ENST00000605757 193 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 HSPE1P14-201ENST00000605812 302 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC243773.3-201ENST00000613270 256 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC012414.7-202ENST00000622705 1090 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC091932.2-201ENST00000623014 291 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL356121.2-201ENST00000624715 780 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC073869.10-201ENST00000642016 354 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC063976.2-201ENST00000425667 3556 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC135352.1-201ENST00000506173 1418 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AC010928.1-201ENST00000592477 1447 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 XPOTP1-201ENST00000443317 2398 ntBASIC5.04□□□□□ -1.6
TDP1Q9NUW8 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.04□□□□□ -1.6
TDP1Q9NUW8 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AC008758.3-201ENST00000507003 1829 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AL590240.1-201ENST00000334118 313 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RNU6-462P-201ENST00000362659 105 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RNU4-91P-201ENST00000364778 135 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RNU6-921P-201ENST00000384361 107 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RNA5SP332-201ENST00000391063 115 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RNA5SP296-201ENST00000410523 111 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 RN7SKP106-201ENST00000410832 272 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AC009480.2-201ENST00000422916 432 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 IPMKP1-201ENST00000425988 855 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AL031736.2-201ENST00000426573 787 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AL512649.1-201ENST00000428997 581 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 ZYG11AP1-201ENST00000430329 837 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AC092641.1-201ENST00000440229 772 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 CDC27P1-201ENST00000445384 715 ntBASIC5.03□□□□□ -1.6
TDP1Q9NUW8 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms