Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RPL9P7-201ENST00000330965 580 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RNU4-4P-201ENST00000364588 130 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 SNORA51.2-201ENST00000364595 132 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RNVU1-6-201ENST00000364688 164 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RNU4-7P-201ENST00000364758 141 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RNU1-138P-201ENST00000384093 164 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RPL23AP59-201ENST00000399415 461 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 MIR1275-201ENST00000408770 80 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RN7SKP220-201ENST00000410611 288 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC073188.3-201ENST00000425228 339 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC092646.1-201ENST00000427142 901 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC129850.1-201ENST00000436203 508 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 HSFY3P-201ENST00000444242 1191 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 OR51B8P-201ENST00000449892 769 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 SUN3-208ENST00000453192 801 ntTSL 5 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC104472.2-201ENST00000469035 601 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 RAD51AP1P1-201ENST00000484195 1001 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC112198.1-201ENST00000505369 1220 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC108475.1-201ENST00000507880 950 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC108471.1-201ENST00000513977 287 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC091304.5-201ENST00000568969 158 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL138895.2-201ENST00000603019 178 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 IGKV1OR2-118-201ENST00000603238 347 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC073387.2-201ENST00000604797 784 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 HSPE1P14-201ENST00000605812 302 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC108865.2-201ENST00000606881 432 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AL020991.1-201ENST00000612314 373 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AC069209.1-201ENST00000619282 651 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 AP003072.4-201ENST00000624580 310 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 FO624990.1-201ENST00000636373 85 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 LARP1BP1-201ENST00000506036 1359 ntBASIC1.96□□□□□ -2.1
LINC00643Q86TS7 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC1.96□□□□□ -2.1
LINC00643Q86TS7 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 MIR6073-201ENST00000352083 89 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 FRG1CP-201ENST00000358464 769 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 MIR191-201ENST00000384873 92 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 SOD2P1-201ENST00000396543 562 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL356057.2-201ENST00000403318 432 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL589994.1-201ENST00000404962 340 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 RPS16P5-201ENST00000406501 404 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 MIR1289-1-201ENST00000408836 144 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 COX6B1P1-201ENST00000415962 213 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 OR8F1P-201ENST00000425243 930 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CR769767.1-201ENST00000436337 346 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CYCSP53-201ENST00000455540 265 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 HNRNPDLP3-201ENST00000456745 380 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 RPL21P41-201ENST00000459863 264 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 RN7SL172P-201ENST00000460535 303 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC006511.1-201ENST00000470614 315 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC020898.1-201ENST00000474167 787 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 DYNLL1P6-201ENST00000503440 264 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 CDH12P2-201ENST00000504393 298 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 PTGES3P3-201ENST00000511479 482 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC108064.1-201ENST00000513791 460 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 RN7SKP116-201ENST00000516902 319 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 IGLVIV-66-1-201ENST00000521832 460 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC004825.1-201ENST00000555068 586 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 HMGN1P26-201ENST00000558737 303 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC091042.1-201ENST00000579213 173 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 MIR5194-201ENST00000582634 120 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 HNRNPDLP4-201ENST00000605144 301 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC006249.1-201ENST00000621223 471 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AL356321.1-201ENST00000621360 228 ntBASIC1.95□□□□□ -2.1
LINC00643Q86TS7 AC010608.2-201ENST00000624830 470 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms