Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.29□□□□□ -2.04
PRKDCP78527 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC2.29□□□□□ -2.04
PRKDCP78527 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC2.29□□□□□ -2.04
PRKDCP78527 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
PRKDCP78527 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PRKDCP78527 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AL645937.1-202ENST00000421799 937 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC092447.2-201ENST00000435487 669 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 RPS26P15-201ENST00000488067 348 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC108210.2-201ENST00000503681 201 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC2.28□□□□□ -2.04
PRKDCP78527 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC2.28□□□□□ -2.04
PRKDCP78527 MIR489-201ENST00000384923 84 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 VN1R8P-201ENST00000407739 893 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC004552.1-201ENST00000419089 348 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC096638.2-201ENST00000434965 711 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 AC084357.1-201ENST00000473404 255 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 RPL21P6-201ENST00000479171 504 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC021205.2-201ENST00000480069 347 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC2.28□□□□□ -2.04
PRKDCP78527 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 ATP5F1P7-201ENST00000567330 760 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC009977.1-201ENST00000586015 570 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC2.28□□□□□ -2.04
PRKDCP78527 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 Y_RNA.508-201ENST00000384502 114 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC2.28□□□□□ -2.04
PRKDCP78527 AL139415.2-201ENST00000431968 163 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 RPL36AP21-201ENST00000490372 323 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC2.28□□□□□ -2.04
PRKDCP78527 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.28□□□□□ -2.04
PRKDCP78527 AC138761.3-201ENST00000579993 334 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.28□□□□□ -2.04
PRKDCP78527 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PRKDCP78527 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
PRKDCP78527 AL021877.2-201ENST00000624442 10684 ntBASIC2.28□□□□□ -2.05
PRKDCP78527 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.05
PRKDCP78527 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.28□□□□□ -2.05
PRKDCP78527 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
PRKDCP78527 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 HMGB3P20-201ENST00000417997 600 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AL009174.1-201ENST00000426577 416 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 ARL5AP4-201ENST00000430731 512 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.27□□□□□ -2.05
PRKDCP78527 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 AC112184.1-201ENST00000505179 312 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 RNA5SP458-201ENST00000516188 119 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AC009163.5-201ENST00000575421 637 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 ELF2P3-201ENST00000445099 1506 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
PRKDCP78527 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 MIR7-2-201ENST00000384970 110 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 AC016696.1-201ENST00000446949 318 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC2.27□□□□□ -2.05
PRKDCP78527 AC010469.1-201ENST00000463864 576 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 USP9YP2-201ENST00000504503 1000 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 USP9YP1-201ENST00000513521 1002 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 RNA5SP367-201ENST00000516557 118 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
PRKDCP78527 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 RHOT1P2-201ENST00000366423 333 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 RNA5SP146-201ENST00000410743 123 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 KLHL2P1-201ENST00000508691 521 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 HIGD1AP13-201ENST00000509878 289 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 RNU1-143P-201ENST00000516296 146 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 AP001004.1-201ENST00000582468 324 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 U1.23-201ENST00000610293 146 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 RNU1-68P-201ENST00000615382 146 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 U1.39-201ENST00000621562 146 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 Z95331.1-201ENST00000623075 23112 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC2.27□□□□□ -2.05
PRKDCP78527 AL022322.2-201ENST00000624072 20397 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms