Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
FOXA1P55317 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
FOXA1P55317 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA1P55317 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA1P55317 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 HSPA8P19-201ENST00000505359 1517 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA1P55317 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
FOXA1P55317 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA1P55317 RN7SKP111-201ENST00000410349 271 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 RPS15AP6-201ENST00000420703 385 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA1P55317 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA1P55317 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 Z95327.1-201ENST00000446082 482 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 RPL26P28-201ENST00000451325 435 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 RPL31P53-201ENST00000457065 348 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.21□□□□□ -1.9
FOXA1P55317 NDUFB4P9-201ENST00000511646 388 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 MTND4LP31-201ENST00000514859 294 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC008676.3-201ENST00000521237 435 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC006518.1-201ENST00000541449 943 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 MIR3922-201ENST00000585192 84 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXA1P55317 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXA1P55317 AC011492.1-201ENST00000600023 315 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 AC245389.1-201ENST00000605141 529 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 MIR92B-201ENST00000607575 96 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.21□□□□□ -1.9
FOXA1P55317 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXA1P55317 AF117829.1-206ENST00000621883 3802 ntBASIC3.21□□□□□ -1.9
FOXA1P55317 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA1P55317 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA1P55317 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA1P55317 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 SNORD6-201ENST00000365444 73 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 RNA5SP293-201ENST00000410527 113 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 RNA5SP229-201ENST00000410809 99 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA1P55317 AC245291.1-201ENST00000419501 328 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL159169.1-201ENST00000421119 127 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL389915.1-201ENST00000422463 466 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA1P55317 AC105402.2-201ENST00000438503 358 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA1P55317 CASP3P1-201ENST00000446037 609 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL035551.1-201ENST00000446931 348 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL354710.1-201ENST00000453641 246 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 C1DP3-201ENST00000455013 423 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 RPL7L1P8-201ENST00000469911 741 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AC021146.5-201ENST00000503544 545 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 HAUS1P1-201ENST00000505275 832 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 FCF1P8-201ENST00000510322 597 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXA1P55317 FTH1P9-201ENST00000513251 355 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 RNU6-319P-201ENST00000516025 108 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 RN7SKP289-201ENST00000517244 295 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 MTCO1P49-201ENST00000523429 802 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA1P55317 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXA1P55317 AC015917.1-201ENST00000579654 510 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 MIR4429-201ENST00000580105 73 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
FOXA1P55317 uc_338.1-201ENST00000612113 180 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 AC107905.1-201ENST00000616204 426 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 SNORD39.4-201ENST00000620099 78 ntBASIC3.2□□□□□ -1.9
FOXA1P55317 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
FOXA1P55317 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
FOXA1P55317 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXA1P55317 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXA1P55317 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.19□□□□□ -1.9
FOXA1P55317 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
FOXA1P55317 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
FOXA1P55317 RN7SKP202-201ENST00000410439 330 ntBASIC3.19□□□□□ -1.9
FOXA1P55317 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXA1P55317 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms