Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA1P49639 MAPK10-263ENST00000641052 4307 ntBASIC3.89□□□□□ -1.79
HOXA1P49639 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA1P49639 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA1P49639 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA1P49639 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA1P49639 AP000756.2-201ENST00000624168 2567 ntBASIC3.89□□□□□ -1.79
HOXA1P49639 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA1P49639 EXOC5P1-201ENST00000510543 1969 ntBASIC3.89□□□□□ -1.79
HOXA1P49639 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA1P49639 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC009951.1-201ENST00000623674 2614 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA1P49639 MIR423-201ENST00000362201 94 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 RNA5SP183-201ENST00000362452 119 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 RNU6-931P-201ENST00000363850 107 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 RNU6-657P-201ENST00000383904 107 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 Y_RNA.436-201ENST00000384097 102 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC092642.1-201ENST00000392417 425 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 ATP5F1P4-201ENST00000397288 746 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 PRRC2CP1-201ENST00000404428 159 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 MIR1286-201ENST00000408112 78 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 RN7SKP182-201ENST00000410772 298 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 NPM1P4-201ENST00000414095 812 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 TBCAP2-201ENST00000416175 326 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 CHEK2P5-201ENST00000423877 246 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AL513175.1-201ENST00000431492 780 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 CFL1P1-202ENST00000432948 411 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 BMS1P19-201ENST00000433925 393 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AL451139.1-201ENST00000434718 346 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA1P49639 TDGF1P1-201ENST00000445734 527 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 RPS27AP15-201ENST00000447672 466 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 MTCO3P16-201ENST00000454456 754 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC097484.1-201ENST00000471148 389 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC104689.1-201ENST00000473356 768 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AP000926.1-201ENST00000479573 241 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 NIPA2P2-201ENST00000496376 1083 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC080014.1-201ENST00000496877 1201 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA1P49639 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC093281.2-201ENST00000510153 597 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 KRT19P6-201ENST00000510983 209 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 OR5BM1P-201ENST00000512021 366 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 FTH1P9-201ENST00000513251 355 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA1P49639 EIF5A2P1-201ENST00000564027 460 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC002400.1-201ENST00000569310 726 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC008759.1-201ENST00000589783 983 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA1P49639 VN1R84P-201ENST00000593697 235 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC018714.1-201ENST00000605028 208 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 HSPE1P14-201ENST00000605812 302 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 AC009163.6-201ENST00000612367 342 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 AC004223.4-201ENST00000612426 332 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 TEX41-254ENST00000626394 423 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 MKKS-204ENST00000639674 192 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA1P49639 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA1P49639 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA1P49639 AC092162.3-201ENST00000624511 1624 ntBASIC3.88□□□□□ -1.79
HOXA1P49639 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXA1P49639 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXA1P49639 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms