Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MTCO1P24-201ENST00000515438 1558 ntBASIC5.31□□□□□ -1.56
CUX1P39880 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.31□□□□□ -1.56
CUX1P39880 OR5BR1P-201ENST00000524992 1330 ntBASIC5.31□□□□□ -1.56
CUX1P39880 RNA5SP322-201ENST00000363617 119 ntBASIC5.31□□□□□ -1.56
CUX1P39880 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC5.31□□□□□ -1.56
CUX1P39880 RPL37P4-201ENST00000448908 268 ntBASIC5.31□□□□□ -1.56
CUX1P39880 SYT14P1-201ENST00000481459 721 ntBASIC5.31□□□□□ -1.56
CUX1P39880 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC5.31□□□□□ -1.56
CUX1P39880 AC099489.2-201ENST00000574976 260 ntBASIC5.31□□□□□ -1.56
CUX1P39880 MIR3945-201ENST00000581853 98 ntBASIC5.31□□□□□ -1.56
CUX1P39880 AL590240.3-201ENST00000621416 943 ntBASIC5.31□□□□□ -1.56
CUX1P39880 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.31□□□□□ -1.56
CUX1P39880 MIR622-201ENST00000638396 96 ntBASIC5.31□□□□□ -1.56
CUX1P39880 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CUX1P39880 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CUX1P39880 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC5.31□□□□□ -1.56
CUX1P39880 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CUX1P39880 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CUX1P39880 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CUX1P39880 AC117440.1-201ENST00000474107 571 ntBASIC5.3□□□□□ -1.56
CUX1P39880 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC5.3□□□□□ -1.56
CUX1P39880 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.3□□□□□ -1.56
CUX1P39880 SNORA70.19-201ENST00000516717 90 ntBASIC5.3□□□□□ -1.56
CUX1P39880 MIR4319-201ENST00000577285 85 ntBASIC5.3□□□□□ -1.56
CUX1P39880 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.3□□□□□ -1.56
CUX1P39880 ATP1B3P1-201ENST00000605365 821 ntBASIC5.3□□□□□ -1.56
CUX1P39880 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.3□□□□□ -1.56
CUX1P39880 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CUX1P39880 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CUX1P39880 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC5.3□□□□□ -1.56
CUX1P39880 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CUX1P39880 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CUX1P39880 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CUX1P39880 RPL7P8-201ENST00000411964 730 ntBASIC5.29□□□□□ -1.56
CUX1P39880 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.29□□□□□ -1.56
CUX1P39880 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC5.29□□□□□ -1.56
CUX1P39880 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CUX1P39880 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC5.29□□□□□ -1.56
CUX1P39880 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.29□□□□□ -1.56
CUX1P39880 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CUX1P39880 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CUX1P39880 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CUX1P39880 AL356968.1-201ENST00000416622 474 ntBASIC5.28□□□□□ -1.56
CUX1P39880 NUP35P1-201ENST00000422734 947 ntBASIC5.28□□□□□ -1.56
CUX1P39880 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.28□□□□□ -1.56
CUX1P39880 HMGB1P16-201ENST00000447155 540 ntBASIC5.28□□□□□ -1.56
CUX1P39880 RPL31P50-201ENST00000471002 296 ntBASIC5.28□□□□□ -1.56
CUX1P39880 AC009812.2-201ENST00000517657 457 ntBASIC5.28□□□□□ -1.56
CUX1P39880 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 AC103881.1-201ENST00000603476 538 ntBASIC5.28□□□□□ -1.56
CUX1P39880 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CUX1P39880 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CUX1P39880 AC018529.3-201ENST00000624212 2254 ntBASIC5.28□□□□□ -1.56
CUX1P39880 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CUX1P39880 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CUX1P39880 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
CUX1P39880 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CUX1P39880 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.28□□□□□ -1.56
CUX1P39880 RPL23AP67-201ENST00000465341 474 ntBASIC5.28□□□□□ -1.56
CUX1P39880 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CUX1P39880 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.28□□□□□ -1.56
CUX1P39880 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.28□□□□□ -1.56
CUX1P39880 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.28□□□□□ -1.56
CUX1P39880 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.28□□□□□ -1.56
CUX1P39880 AC233280.2-201ENST00000603917 1070 ntBASIC5.28□□□□□ -1.56
CUX1P39880 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
CUX1P39880 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.27□□□□□ -1.57
CUX1P39880 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
CUX1P39880 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CUX1P39880 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 MTND2P25-201ENST00000449028 610 ntBASIC5.27□□□□□ -1.57
CUX1P39880 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC5.27□□□□□ -1.57
CUX1P39880 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.27□□□□□ -1.57
CUX1P39880 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.27□□□□□ -1.57
CUX1P39880 H3F3AP1-201ENST00000559984 334 ntBASIC5.27□□□□□ -1.57
CUX1P39880 AC099506.2-201ENST00000623074 221 ntBASIC5.27□□□□□ -1.57
CUX1P39880 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.27□□□□□ -1.57
CUX1P39880 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CUX1P39880 AC090971.4-201ENST00000560291 1800 ntBASIC5.26□□□□□ -1.57
CUX1P39880 PTP4A1P3-201ENST00000433661 420 ntBASIC5.26□□□□□ -1.57
CUX1P39880 AC093156.1-201ENST00000440382 670 ntBASIC5.26□□□□□ -1.57
CUX1P39880 AC108938.1-201ENST00000451204 136 ntBASIC5.26□□□□□ -1.57
CUX1P39880 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.26□□□□□ -1.57
CUX1P39880 TRBV8-2-201ENST00000475637 270 ntBASIC5.26□□□□□ -1.57
CUX1P39880 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.26□□□□□ -1.57
CUX1P39880 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.26□□□□□ -1.57
CUX1P39880 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC5.26□□□□□ -1.57
CUX1P39880 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.26□□□□□ -1.57
CUX1P39880 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC5.26□□□□□ -1.57
CUX1P39880 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.26□□□□□ -1.57
CUX1P39880 AC009948.4-201ENST00000604692 675 ntBASIC5.26□□□□□ -1.57
CUX1P39880 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms