Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 FO393413.1-201ENST00000402892 195 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 SNORA81-201ENST00000408493 178 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RNU2-6P-201ENST00000411404 190 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 MTND4P22-201ENST00000413116 1169 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 GTF3AP1-201ENST00000416942 1004 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 Z97055.1-201ENST00000419730 712 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL356806.1-201ENST00000422524 916 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 CYCSP4-201ENST00000429682 331 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RBMY2QP-201ENST00000429799 1147 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC005189.1-201ENST00000431286 310 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 ELOCP11-201ENST00000436690 332 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 MUPP-201ENST00000438111 566 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 NOTCH2P1-201ENST00000443481 624 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 ELOCP16-201ENST00000444494 332 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 OR9M1P-201ENST00000459641 921 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RN7SL98P-201ENST00000462271 300 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RPL5P24-201ENST00000463742 885 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RPL23AP11-201ENST00000475260 469 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RPS3AP6-201ENST00000484430 795 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AP001025.2-201ENST00000490908 477 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RN7SL810P-201ENST00000493031 276 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AP001207.1-201ENST00000524051 481 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 OR4A45P-201ENST00000529954 901 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 MIR3691-201ENST00000578066 90 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 MIR4446-201ENST00000578505 67 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RN7SL690P-201ENST00000582087 240 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL031320.1-201ENST00000604177 357 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC019159.1-201ENST00000605094 187 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC005899.6-201ENST00000620729 297 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL732618.1-201ENST00000623251 301 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AC079228.1-201ENST00000624774 1049 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 AL139254.3-201ENST00000641097 674 ntBASIC1.84□□□□□ -2.11
CHKB-CPT1BH3BT56 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CHKB-CPT1BH3BT56 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC1.84□□□□□ -2.12
CHKB-CPT1BH3BT56 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 RNA5SP123-201ENST00000363244 119 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 RNA5SP42-201ENST00000364278 115 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL356057.2-201ENST00000403318 432 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL139095.1-201ENST00000404326 391 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL591034.1-201ENST00000407447 340 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 U3.39-201ENST00000408569 239 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL590806.1-201ENST00000415818 853 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL691447.1-201ENST00000419456 387 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL356387.2-201ENST00000422272 243 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 RPL21P66-201ENST00000426566 466 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 OR2AS1P-201ENST00000427827 319 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 HMGB3P11-201ENST00000440127 604 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC008264.1-201ENST00000447612 367 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC011005.3-201ENST00000491624 395 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC110792.1-201ENST00000491826 472 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 HMGB1P3-201ENST00000502802 616 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC099522.1-202ENST00000514718 367 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC087369.1-201ENST00000520775 996 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC004486.1-201ENST00000546846 233 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC009117.1-201ENST00000563948 554 ntBASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC1.83□□□□□ -2.12
CHKB-CPT1BH3BT56 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms