Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RNU4-92P-201ENST00000363783 136 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RNU6-549P-201ENST00000384433 107 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RNU6-636P-201ENST00000384598 107 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 Y_RNA.578-201ENST00000390903 88 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RPS26P8-201ENST00000393490 348 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AP000357.1-201ENST00000409926 1165 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC010099.3-201ENST00000423896 409 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AL592437.1-201ENST00000443781 492 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 HMGB3P6-201ENST00000444896 598 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC112492.1-201ENST00000449607 712 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RPL7P19-201ENST00000469948 618 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC103987.1-201ENST00000473394 348 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AF213884.1-201ENST00000488102 463 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RPS27AP13-201ENST00000498403 237 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC099522.1-202ENST00000514718 367 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC105233.3-201ENST00000531125 744 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC100770.1-201ENST00000532310 322 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 DUXAP6-201ENST00000553858 601 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC145350.1-201ENST00000567426 208 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC061975.8-201ENST00000587058 721 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 VN1R78P-201ENST00000597393 564 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC125494.3-201ENST00000602759 455 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AL139395.1-201ENST00000603662 160 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC055764.2-201ENST00000610089 670 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC078899.5-201ENST00000612475 178 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC093783.1-201ENST00000612976 329 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC000123.2-201ENST00000623124 461 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 AC073055.1-201ENST00000456901 1621 ntBASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SNX9Q9Y5X1 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 RNU1-15P-201ENST00000353977 144 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 PDSS1P1-201ENST00000422953 1114 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 COX6CP15-201ENST00000426313 211 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 RPL23AP46-201ENST00000438548 490 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC005410.1-202ENST00000460347 485 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC004263.1-201ENST00000479327 332 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC108145.1-201ENST00000503770 153 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC008694.2-201ENST00000517591 306 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 MTCO3P15-201ENST00000526563 574 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC023050.2-201ENST00000544968 387 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC069240.1-201ENST00000548774 375 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC023813.2-201ENST00000564321 469 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 MTCO1P40-201ENST00000574371 625 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 BNIP3P24-201ENST00000593398 557 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL020997.3-201ENST00000602843 359 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC090525.3-201ENST00000605601 189 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC023509.5-201ENST00000617434 807 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AL158163.2-201ENST00000619110 700 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC013470.4-201ENST00000619978 986 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC024595.1-201ENST00000623088 387 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AP003072.4-201ENST00000624580 310 ntBASIC4.51□□□□□ -1.69
SNX9Q9Y5X1 AC016717.3-201ENST00000624730 554 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms