Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.15□□□□□ -1.74
PCDHGA1Q9Y5H4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC016716.1-201ENST00000265882 708 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RNU1-83P-201ENST00000363426 164 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 U6.112-201ENST00000384129 70 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 MIR449B-201ENST00000384995 97 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AL355143.1-201ENST00000407101 841 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 OR4F13P-201ENST00000428478 931 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RPS7P2-201ENST00000435134 607 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC000041.1-201ENST00000439655 175 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC005008.1-201ENST00000456151 612 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC093755.1-201ENST00000512950 1023 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 FTH1P9-201ENST00000513251 355 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RNA5SP519-201ENST00000516480 119 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RNA5SP309-201ENST00000516670 106 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC087894.1-201ENST00000538359 518 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC023825.1-201ENST00000566704 1030 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC090666.1-201ENST00000578241 445 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RN7SL703P-201ENST00000578485 302 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 BPTFP1-201ENST00000579209 492 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC008507.2-201ENST00000588402 1176 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC024220.1-201ENST00000603675 484 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC092953.2-201ENST00000608000 699 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC026368.1-201ENST00000614934 690 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AC006927.2-201ENST00000639256 389 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RLIMP1-201ENST00000339626 1680 ntBASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
PCDHGA1Q9Y5H4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC092435.4-201ENST00000623012 4159 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 SNORA11.1-201ENST00000408133 129 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 RNA5SP36-201ENST00000410197 133 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 RPL31P2-201ENST00000413849 377 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC115285.1-201ENST00000424879 736 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AL009174.1-201ENST00000426577 416 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 RPL23AP25-201ENST00000430973 463 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 UBE2V1P3-201ENST00000439651 417 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AL645931.1-201ENST00000439737 410 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 RPL23AP33-201ENST00000442301 452 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 RPL23AP81-201ENST00000455252 467 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 CDC42P1-201ENST00000456658 548 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC093801.2-201ENST00000503966 1050 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 FTH1P21-201ENST00000512179 511 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 IGJP1-201ENST00000522682 475 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 MIR4504-201ENST00000577413 92 ntBASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.14□□□□□ -1.75
PCDHGA1Q9Y5H4 BNIP3P27-201ENST00000599991 412 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms