Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 RPL23AP87-202ENST00000573039 466 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC008088.1-201ENST00000580993 280 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC067959.1-201ENST00000604334 379 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 VN1R74P-201ENST00000613259 503 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 SNX18P1Y-201ENST00000616231 511 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC139769.3-201ENST00000618383 175 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 MIR7702-201ENST00000621931 59 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 OR1S1-201ENST00000624470 978 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC008785.1-201ENST00000624475 456 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 RLIMP1-201ENST00000339626 1680 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 CASC19-284ENST00000642142 1868 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 USP9YP4-201ENST00000424401 1745 ntBASIC4.41□□□□□ -1.7
SIX4Q9UIU6 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.41□□□□□ -1.7
SIX4Q9UIU6 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
SIX4Q9UIU6 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
SIX4Q9UIU6 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SIX4Q9UIU6 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.4□□□□□ -1.7
SIX4Q9UIU6 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
SIX4Q9UIU6 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RNU6-1214P-201ENST00000363650 109 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RNA5SP479-201ENST00000364858 117 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 SNORD116-2-201ENST00000384274 95 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 SNORD116-6-201ENST00000384711 96 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 HSPE1P12-201ENST00000412576 301 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 OR4K6P-201ENST00000416478 897 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC108032.1-201ENST00000416706 207 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AL929288.2-201ENST00000446368 407 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 OR6K5P-201ENST00000447050 945 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 NPM1P13-201ENST00000452663 865 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 DNAJC19P8-201ENST00000452887 259 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 MRPL35P4-201ENST00000453682 566 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AL122001.1-201ENST00000457027 370 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RNU7-27P-201ENST00000459281 62 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RPL7P1-201ENST00000468161 747 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RPL7P9-201ENST00000468715 747 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC091959.2-201ENST00000477363 321 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC093267.1-201ENST00000489176 961 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC034244.1-201ENST00000507687 207 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 STMN1P2-201ENST00000508435 439 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC104108.1-201ENST00000509930 412 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC108064.1-201ENST00000513791 460 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC007834.2-201ENST00000536310 343 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 OSBPL9P5-201ENST00000542581 171 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 MIR3160-1-201ENST00000577972 85 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC022884.3-201ENST00000579571 248 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 BNIP3P4-201ENST00000604946 565 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC112484.5-201ENST00000624189 228 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC055839.1-201ENST00000634467 498 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 ZNF663P-202ENST00000641770 1131 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC138393.1-206ENST00000540997 1886 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC104446.1-201ENST00000613728 1321 ntBASIC4.4□□□□□ -1.71
SIX4Q9UIU6 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.4□□□□□ -1.71
SIX4Q9UIU6 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SIX4Q9UIU6 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SIX4Q9UIU6 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
SIX4Q9UIU6 SPRR2C-201ENST00000290702 219 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.39□□□□□ -1.71
SIX4Q9UIU6 RNA5SP513-201ENST00000364648 118 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 SNORD116.1-201ENST00000365628 92 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SIX4Q9UIU6 SNORA40.2-201ENST00000390847 128 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 AC092745.2-202ENST00000411880 369 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 Z75741.2-201ENST00000417272 1167 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.39□□□□□ -1.71
SIX4Q9UIU6 DYNLL1P7-201ENST00000429273 258 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms