Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
TM9SF3Q9HD45 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 MTCO1P24-201ENST00000515438 1558 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 DDX6P1-205ENST00000441966 1436 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AL157700.1-201ENST00000561973 1432 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 OR4A15-201ENST00000314706 1035 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 SNORD35B-201ENST00000363660 87 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 SNORA73.2-201ENST00000364946 201 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 RN7SKP156-201ENST00000410308 342 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 OR51AB1P-201ENST00000429046 620 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 YME1L1P1-201ENST00000429435 297 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC006994.1-201ENST00000438212 839 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AF228730.2-201ENST00000438784 848 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 RAD23BP3-201ENST00000454157 1152 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 RPL7P15-201ENST00000461190 712 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC104689.1-201ENST00000473356 768 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 TRBV8-2-201ENST00000475637 270 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 RN7SL323P-201ENST00000494712 295 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 MTND2P26-201ENST00000528255 1029 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 OR5D17P-201ENST00000531492 978 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AP003717.3-201ENST00000544832 1180 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 CYCSP30-201ENST00000546447 172 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC091516.1-201ENST00000549191 703 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 NOP56P3-201ENST00000549457 385 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC009101.1-201ENST00000568135 242 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 SNORA51-201ENST00000606420 132 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 AC090337.1-201ENST00000579651 2074 ntBASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TM9SF3Q9HD45 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 SNORD46.1-201ENST00000364139 104 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RNA5SP387-201ENST00000364226 106 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 BTBD10P2-201ENST00000404779 676 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AL355379.1-201ENST00000405542 640 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 SNORA3C-201ENST00000408792 125 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 CRYBB2P1-203ENST00000415709 538 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 LINC01347-201ENST00000417964 355 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 MTCO1P54-201ENST00000430139 712 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 TPTE2P3-201ENST00000441562 1189 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RPL6P5-201ENST00000445678 828 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RPL23AP62-201ENST00000463396 453 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RN7SKP157-201ENST00000516174 282 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 RNU7-143P-201ENST00000516781 65 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 OR4R3P-201ENST00000525084 838 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC012417.1-201ENST00000582307 1039 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC015726.1-201ENST00000602353 681 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AL451044.1-201ENST00000604867 238 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC015849.2-201ENST00000605738 409 ntBASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.97□□□□□ -1.77
TM9SF3Q9HD45 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms