Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC093422.3-201ENST00000428506 305 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 RPS27AP12-201ENST00000429552 465 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 KCTD9P3-201ENST00000434597 1169 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 RPS26P56-201ENST00000444468 240 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC106806.2-201ENST00000509365 500 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC092851.1-201ENST00000535964 478 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AGGF1P8-201ENST00000562979 1000 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 LINC00557-201ENST00000563184 1279 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AL360157.1-201ENST00000565962 87 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC017100.2-201ENST00000584628 355 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC006116.5-201ENST00000591936 559 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC110741.2-201ENST00000605278 268 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC010608.2-201ENST00000624830 470 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC005261.4-201ENST00000600047 1385 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 AC000367.1-201ENST00000452711 1766 ntBASIC3.99□□□□□ -1.77
VPS39Q96JC1 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
VPS39Q96JC1 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS39Q96JC1 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR11H4-201ENST00000315409 1082 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 SNORA11C-201ENST00000408532 129 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC073264.1-201ENST00000411508 416 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR5BE1P-201ENST00000425977 939 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 HIGD1AP4-201ENST00000430194 280 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC073143.1-201ENST00000436316 395 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AF228730.2-201ENST00000438784 848 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC009263.1-201ENST00000441193 1239 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC015724.1-201ENST00000478577 156 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 RPL7P24-201ENST00000493052 752 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 USP9YP5-201ENST00000511770 630 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC026726.1-201ENST00000512859 601 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AF279873.1-201ENST00000523393 313 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 ATP5F1P7-201ENST00000567330 760 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC009101.1-201ENST00000568135 242 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 IGHV3-29-201ENST00000604817 344 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 MIR6748-201ENST00000610433 71 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC006213.5-201ENST00000619673 288 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR5BE1P-202ENST00000641168 1176 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 FAM91A3P-201ENST00000456826 2544 ntBASIC3.98□□□□□ -1.77
VPS39Q96JC1 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS39Q96JC1 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS39Q96JC1 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS39Q96JC1 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS39Q96JC1 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms