Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC008687.2-201ENST00000597865 520 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 SNORA51-201ENST00000606420 132 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AL669942.2-201ENST00000620352 697 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC093908.1-201ENST00000623125 8092 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 MFSD8-213ENST00000641134 1327 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 FAM91A3P-201ENST00000456826 2544 ntBASIC4.14□□□□□ -1.75
HDDC3Q8N4P3 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RNU1-108P-201ENST00000362556 161 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RNU4-27P-201ENST00000410889 139 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RPL7P53-201ENST00000421245 739 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 OR5BE1P-201ENST00000425977 939 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 YWHAEP5-201ENST00000431545 765 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 MTCO1P43-201ENST00000431831 488 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RPS4XP4-201ENST00000443195 763 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 Z77249.1-201ENST00000444622 1175 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AL500522.2-201ENST00000448562 343 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 BX248409.1-201ENST00000455497 255 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RPS26P28-201ENST00000470806 348 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC092045.1-201ENST00000495716 1231 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 RPL5P23-201ENST00000496040 868 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 SOD1P3-201ENST00000518682 454 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AP000619.3-201ENST00000535634 1127 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC063950.1-201ENST00000552036 308 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC095057.3-201ENST00000567102 1157 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AL161756.2-201ENST00000604597 246 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC019176.2-201ENST00000611579 315 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 MIR7151-201ENST00000617477 60 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC006213.5-201ENST00000619673 288 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AC012314.7-201ENST00000619693 93 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 OR5BE1P-202ENST00000641168 1176 ntBASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HDDC3Q8N4P3 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 KPNA2P2-201ENST00000419546 1489 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RNU1-15P-201ENST00000353977 144 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 ATP5F1P6-201ENST00000402768 767 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL160275.2-201ENST00000412010 394 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL691449.1-201ENST00000426570 421 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 SKP1P3-201ENST00000429280 487 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RPS26P30-201ENST00000443431 335 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RPS3AP12-201ENST00000443616 753 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL590399.6-201ENST00000446396 307 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 TVP23BP2-201ENST00000455082 615 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RPL21P47-201ENST00000483696 477 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL139099.1-201ENST00000497398 403 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 MTND3P24-201ENST00000506306 329 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 VWA8P1-201ENST00000510889 176 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 HIGD1AP3-201ENST00000515857 278 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 RNU6-202P-201ENST00000515998 96 ntBASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.12□□□□□ -1.75
HDDC3Q8N4P3 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms