Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC073073.2-201ENST00000609827 2578 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 RNU1-89P-201ENST00000384592 164 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AL139132.1-201ENST00000431587 344 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 HIGD1AP3-201ENST00000515857 278 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC026333.2-201ENST00000542164 106 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 DUXAP6-201ENST00000553858 601 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AL356489.2-201ENST00000566968 3528 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 AC018529.3-201ENST00000624212 2254 ntBASIC4.12□□□□□ -1.75
CCDC88AQ3V6T2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 RNA5SP229-201ENST00000410809 99 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC107083.1-201ENST00000439643 279 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AL357552.1-201ENST00000445254 415 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 DNAJC19P8-201ENST00000452887 259 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 RPS6P2-201ENST00000454208 705 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC010307.1-201ENST00000467206 836 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC021678.1-201ENST00000505195 936 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 GTF3AP2-201ENST00000557014 266 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 BNIP3P38-201ENST00000601117 544 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 LINC00901.1-201ENST00000617252 152 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AL136116.1-201ENST00000403591 381 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AL589765.3-201ENST00000446084 462 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 AC015802.5-201ENST00000607478 399 ntBASIC4.11□□□□□ -1.75
CCDC88AQ3V6T2 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 AL353678.1-201ENST00000422735 741 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 RPS29P31-201ENST00000446147 164 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 IGLVIV-53-201ENST00000520107 367 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 AC087888.1-201ENST00000550884 1254 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 BRDTP1-201ENST00000605735 677 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 NCAPGP1-201ENST00000505112 1814 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 CR381670.1-201ENST00000624291 1693 ntBASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC88AQ3V6T2 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 AC005002.1-201ENST00000447458 540 ntBASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 VN1R104P-201ENST00000505115 1009 ntBASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 RN7SKP132-201ENST00000516001 208 ntBASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 AC099489.2-201ENST00000574976 260 ntBASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 AC011503.2-201ENST00000594230 1500 ntBASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC88AQ3V6T2 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 AC005183.1-201ENST00000603687 1979 ntBASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 RNU1-70P-201ENST00000362618 164 ntBASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 LAP3P1-201ENST00000403648 294 ntBASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 PSMA2P1-201ENST00000526365 646 ntBASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.09□□□□□ -1.76
CCDC88AQ3V6T2 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.09□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms