Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RNA5SP50-201ENST00000363731 107 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 MIR490-201ENST00000384865 128 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
FOXF1Q12946 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 HSFY4P-201ENST00000415994 1181 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AL513174.1-201ENST00000423182 629 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 UBE2V2P1-201ENST00000434717 398 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXF1Q12946 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXF1Q12946 RAB28P3-201ENST00000448325 597 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXF1Q12946 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
FOXF1Q12946 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXF1Q12946 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AC107934.2-201ENST00000518653 310 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXF1Q12946 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
FOXF1Q12946 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AC106785.3-201ENST00000564064 847 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 MIR4425-201ENST00000580572 84 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.09□□□□□ -1.91
FOXF1Q12946 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.09□□□□□ -1.91
FOXF1Q12946 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.09□□□□□ -1.91
FOXF1Q12946 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AL592494.3-201ENST00000609485 464 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 AL356274.1-201ENST00000617064 410 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 OR8B1P-202ENST00000641132 1178 ntBASIC3.09□□□□□ -1.91
FOXF1Q12946 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
FOXF1Q12946 PWAR6-201ENST00000552334 4618 ntBASIC3.09□□□□□ -1.92
FOXF1Q12946 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
FOXF1Q12946 DDX6P1-205ENST00000441966 1436 ntBASIC3.09□□□□□ -1.92
FOXF1Q12946 MTCO1P12-201ENST00000414273 1543 ntBASIC3.09□□□□□ -1.92
FOXF1Q12946 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 SNORA71.3-201ENST00000362582 128 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 BX323014.1-201ENST00000412876 237 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AC126124.2-201ENST00000413542 321 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 RPL23AP4-201ENST00000427757 463 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 CYCSP43-201ENST00000438233 310 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXF1Q12946 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC097262.1-201ENST00000452559 548 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 CLIC4P1-201ENST00000453177 535 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AL354710.1-201ENST00000453641 246 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 SNRPGP5-201ENST00000456003 220 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 RPS4XP2-201ENST00000458402 793 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 RPL23AP67-201ENST00000465341 474 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AP000893.1-201ENST00000474462 794 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 RN7SL293P-201ENST00000481765 281 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXF1Q12946 FCF1P8-201ENST00000510322 597 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 ARL2BPP6-201ENST00000512757 439 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 FTH1P9-201ENST00000513251 355 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.08□□□□□ -1.92
FOXF1Q12946 IGKV2-26-201ENST00000518305 343 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXF1Q12946 OR4R3P-201ENST00000525084 838 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC005476.1-201ENST00000554427 397 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.08□□□□□ -1.92
FOXF1Q12946 AC015802.5-201ENST00000607478 399 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 AC127502.3-201ENST00000636170 1206 ntBASIC3.08□□□□□ -1.92
FOXF1Q12946 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
FOXF1Q12946 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
FOXF1Q12946 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXF1Q12946 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.07□□□□□ -1.92
FOXF1Q12946 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
FOXF1Q12946 RNA5SP119-201ENST00000362715 117 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 RNU1-85P-201ENST00000364127 164 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 MIR23B-201ENST00000384832 97 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 RN7SKP111-201ENST00000410349 271 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 RPL7P53-201ENST00000421245 739 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 RPL23AP82-202ENST00000427528 469 ntBASIC3.07□□□□□ -1.92
FOXF1Q12946 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms