Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC005005.4-201ENST00000623789 16698 ntBASIC5.45□□□□□ -1.54
RNF4P78317 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.45□□□□□ -1.54
RNF4P78317 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
RNF4P78317 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-28P-201ENST00000362378 107 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-1120P-201ENST00000362988 108 ntBASIC5.44□□□□□ -1.54
RNF4P78317 SNORD1C-201ENST00000363315 78 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RNA5SP500-201ENST00000364486 119 ntBASIC5.44□□□□□ -1.54
RNF4P78317 Y_RNA.419-201ENST00000384041 102 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-1293P-201ENST00000384077 107 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-692P-201ENST00000384496 107 ntBASIC5.44□□□□□ -1.54
RNF4P78317 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 AL356421.1-201ENST00000403255 413 ntBASIC5.44□□□□□ -1.54
RNF4P78317 SNORA11.3-201ENST00000408471 128 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.44□□□□□ -1.54
RNF4P78317 ELOCP4-201ENST00000420090 333 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL353678.1-201ENST00000422735 741 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.44□□□□□ -1.54
RNF4P78317 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 CBWD4P-201ENST00000445695 655 ntBASIC5.44□□□□□ -1.54
RNF4P78317 MRPL50P4-201ENST00000446432 475 ntBASIC5.44□□□□□ -1.54
RNF4P78317 SLC25A18P1-201ENST00000449385 454 ntBASIC5.44□□□□□ -1.54
RNF4P78317 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-261P-201ENST00000459506 102 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RPL38P3-201ENST00000484463 213 ntBASIC5.44□□□□□ -1.54
RNF4P78317 NIPA2P2-201ENST00000496376 1083 ntBASIC5.44□□□□□ -1.54
RNF4P78317 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 AC105029.1-201ENST00000520250 669 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.44□□□□□ -1.54
RNF4P78317 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 AC022690.1-201ENST00000526681 550 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AP005639.2-201ENST00000527592 928 ntBASIC5.44□□□□□ -1.54
RNF4P78317 OR5B19P-201ENST00000531766 928 ntBASIC5.44□□□□□ -1.54
RNF4P78317 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.44□□□□□ -1.54
RNF4P78317 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC5.44□□□□□ -1.54
RNF4P78317 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 MIR4504-201ENST00000577413 92 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.44□□□□□ -1.54
RNF4P78317 AC027243.2-201ENST00000602530 724 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL161729.3-201ENST00000603533 673 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL122125.1-201ENST00000616999 600 ntBASIC5.44□□□□□ -1.54
RNF4P78317 SNORA11.6-201ENST00000619030 128 ntBASIC5.44□□□□□ -1.54
RNF4P78317 RNU6-156P-201ENST00000621869 107 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AC091305.2-201ENST00000624049 1576 ntBASIC5.44□□□□□ -1.54
RNF4P78317 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.44□□□□□ -1.54
RNF4P78317 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 AC009313.2-201ENST00000417893 1941 ntBASIC5.44□□□□□ -1.54
RNF4P78317 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
RNF4P78317 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.44□□□□□ -1.54
RNF4P78317 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
RNF4P78317 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 AC022164.1-201ENST00000568767 2673 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL137141.1-201ENST00000624622 4836 ntBASIC5.43□□□□□ -1.54
RNF4P78317 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 ATP8A2P2-201ENST00000437678 1568 ntBASIC5.43□□□□□ -1.54
RNF4P78317 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 PWAR1-201ENST00000624188 2414 ntBASIC5.43□□□□□ -1.54
RNF4P78317 HSPA8P18-201ENST00000439846 1928 ntBASIC5.43□□□□□ -1.54
RNF4P78317 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
RNF4P78317 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
RNF4P78317 AL161781.1-201ENST00000354277 403 ntBASIC5.43□□□□□ -1.54
RNF4P78317 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
RNF4P78317 Y_RNA.162-201ENST00000363683 102 ntBASIC5.43□□□□□ -1.54
RNF4P78317 RNA5SP510-201ENST00000364697 99 ntBASIC5.43□□□□□ -1.54
RNF4P78317 RNU6-169P-201ENST00000365336 107 ntBASIC5.43□□□□□ -1.54
RNF4P78317 RN7SKP81-201ENST00000365603 331 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL591416.1-201ENST00000404015 867 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL024474.1-201ENST00000404655 591 ntBASIC5.43□□□□□ -1.54
RNF4P78317 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.43□□□□□ -1.54
RNF4P78317 RPS3AP2-201ENST00000407190 754 ntBASIC5.43□□□□□ -1.54
RNF4P78317 RN7SKP29-201ENST00000410957 272 ntBASIC5.43□□□□□ -1.54
RNF4P78317 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.43□□□□□ -1.54
RNF4P78317 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms