Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC114322.1-201ENST00000506771 926 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 RFPL4AP5-201ENST00000514977 504 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.66□□□□□ -1.82
COL4A4P53420 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.66□□□□□ -1.82
COL4A4P53420 AC005183.1-201ENST00000603687 1979 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.66□□□□□ -1.82
COL4A4P53420 AC068647.1-201ENST00000489539 2265 ntBASIC3.66□□□□□ -1.82
COL4A4P53420 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL4A4P53420 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.66□□□□□ -1.82
COL4A4P53420 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.65□□□□□ -1.82
COL4A4P53420 SNORA80A-201ENST00000363922 136 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 MTND4P11-201ENST00000417020 1058 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A4P53420 ACTG1P13-201ENST00000486987 1043 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 RNU6-551P-201ENST00000516661 103 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 NARSP2-201ENST00000518524 679 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.65□□□□□ -1.82
COL4A4P53420 AC141257.3-201ENST00000572906 215 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.65□□□□□ -1.82
COL4A4P53420 AC090330.1-201ENST00000588646 764 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.65□□□□□ -1.82
COL4A4P53420 AC012467.1-201ENST00000607740 256 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AC016542.1-201ENST00000608259 493 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AC004908.3-201ENST00000610248 625 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AC097478.2-201ENST00000610572 514 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.65□□□□□ -1.82
COL4A4P53420 AC006927.4-201ENST00000639187 543 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL4A4P53420 LINC02471-203ENST00000641941 4752 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AC073073.2-201ENST00000609827 2578 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 AC027287.1-201ENST00000553115 1453 ntBASIC3.65□□□□□ -1.82
COL4A4P53420 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A4P53420 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.65□□□□□ -1.83
COL4A4P53420 ZNF90P1-201ENST00000480493 1951 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A4P53420 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A4P53420 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A4P53420 RNA5SP229-201ENST00000410809 99 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL4A4P53420 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.65□□□□□ -1.83
COL4A4P53420 OOSP1P1-201ENST00000423265 274 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 RPL23AP82-202ENST00000427528 469 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 RPL23AP69-201ENST00000431134 458 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 AL513175.1-201ENST00000431492 780 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.65□□□□□ -1.83
COL4A4P53420 CENPBD1P1-201ENST00000464061 469 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 AC021205.2-201ENST00000480069 347 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 AC026333.2-201ENST00000542164 106 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.65□□□□□ -1.83
COL4A4P53420 AC011458.1-201ENST00000604034 617 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 AC009464.1-201ENST00000615731 469 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.65□□□□□ -1.83
COL4A4P53420 AC020923.1-201ENST00000624021 917 ntBASIC3.65□□□□□ -1.83
COL4A4P53420 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.65□□□□□ -1.83
COL4A4P53420 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.65□□□□□ -1.83
COL4A4P53420 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
COL4A4P53420 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.64□□□□□ -1.83
COL4A4P53420 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 AL391417.1-201ENST00000404100 426 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 RSL24D1P1-201ENST00000404972 493 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 AL158071.1-201ENST00000430315 461 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 AC107083.1-201ENST00000439643 279 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 MTCO3P16-201ENST00000454456 754 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 ANP32BP2-201ENST00000454525 545 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC3.64□□□□□ -1.83
COL4A4P53420 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.64□□□□□ -1.83
COL4A4P53420 MTND1P8-201ENST00000571424 950 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC099489.2-201ENST00000574976 260 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.64□□□□□ -1.83
COL4A4P53420 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
COL4A4P53420 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
COL4A4P53420 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 AC063923.1-201ENST00000478982 1619 ntBASIC3.64□□□□□ -1.83
COL4A4P53420 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC3.64□□□□□ -1.83
COL4A4P53420 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL4A4P53420 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
COL4A4P53420 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
COL4A4P53420 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 175.2 ms